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TFPT TCF3 fusion partner [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100463772, updated on 8-Mar-2024

Summary

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Gene symbol
TFPT
Gene description
TCF3 fusion partner
Locus tag
PANDA_017883
See related
Ensembl:ENSAMEG00000004497
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See TFPT in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 12 NC_048229.1 (27205085..27213275)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218674.1 (299858..308046, complement)

Chromosome 12 - NC_048229.1Genomic Context describing neighboring genes Neighboring gene leukocyte receptor cluster member 1 Neighboring gene CCR4-NOT transcription complex subunit 3 Neighboring gene pre-mRNA processing factor 31 Neighboring gene NADH:ubiquinone oxidoreductase subunit A3 Neighboring gene osteoclast associated Ig-like receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ino80 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TCF3 fusion partner

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048229.1 Reference ASM200744v2 Primary Assembly

    Range
    27205085..27213275
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002927955.4 → XP_002928001.1  TCF3 fusion partner isoform X1

    UniProtKB/TrEMBL
    D2HYQ5, G1LCV3
    Related
    ENSAMEP00000004733.1, ENSAMET00000004924.2
    Conserved Domains (1) summary
    TIGR01348
    Location:128 → 188
    PDHac_trf_long; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

  2. XM_019808709.2 → XP_019664268.1  TCF3 fusion partner isoform X3

    UniProtKB/TrEMBL
    D2HYQ5

  3. XM_011235689.3 → XP_011233991.1  TCF3 fusion partner isoform X2

    UniProtKB/TrEMBL
    D2HYQ5
    Conserved Domains (1) summary
    TIGR01348
    Location:123 → 183
    PDHac_trf_long; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form
Nucleotide Protein
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