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march5b membrane-associated ring finger (C3HC4) 5b [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100462687, updated on 14-Dec-2023

Summary

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Gene symbol
march5b
Gene description
membrane-associated ring finger (C3HC4) 5b
See related
Ensembl:ENSOMYG00000016515
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See march5b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 1 NC_048565.1 (63031594..63075340, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 1 NC_035077.1 (59127519..59168996, complement)

Chromosome 1 - NC_048565.1Genomic Context describing neighboring genes Neighboring gene kynurenine 3-monooxygenase Neighboring gene insulin-degrading enzyme Neighboring gene cytoplasmic polyadenylation element-binding protein 3 Neighboring gene TATA-binding protein-associated factor 172

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MARCH5 gene is duplicated in rainbow trout, but only fish-specific gene copy is up-regulated after VHSV infection. Rebl A, et al. Fish Shellfish Immunol, 2011 Dec. PMID 21939770
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
membrane-associated ring finger (C3HC4) 5b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001185035.1 → NP_001171964.1  membrane-associated ring finger (C3HC4) 5b

    See identical proteins and their annotated locations for NP_001171964.1

    Status: PROVISIONAL

    Source sequence(s)
    FN677805
    UniProtKB/TrEMBL
    D3VNG9, E7BBH6
    Related
    ENSOMYP00000035568.1, ENSOMYT00000038786.2
    Conserved Domains (1) summary
    cd16701
    Location:15 → 75
    RING_CH-C4HC3_MARCH5; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH5 (MARCH5)

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048565.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    63031594..63075340 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021573327.2 → XP_021429002.1  membrane-associated ring finger (C3HC4) 5b isoform X1

    UniProtKB/TrEMBL
    A0A060VUL4, E7BBH6
    Related
    ENSOMYP00000035575.1, ENSOMYT00000038795.2
    Conserved Domains (1) summary
    cd16701
    Location:15 → 75
    RING_CH-C4HC3_MARCH5; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH5 (MARCH5)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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