LRRC7 leucine rich repeat containing 7 [Pongo abelii (Sumatran orangutan)] - Gene

Summary

Gene symbol: LRRC7
Gene description: leucine rich repeat containing 7
Locus tag: CR201_G0008581
See related: Ensembl:ENSPPYG00000001247
Gene type: protein coding
RefSeq status: MODEL
Organism: Pongo abelii
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 34

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2)	1	NC_071985.2 (162986913..164065162, complement)
RS_2023_04	previous assembly	NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1)	1	NC_071985.1 (162993819..163538305, complement)

Chromosome 1 - NC_071985.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

WI-15123 (e-PCR)
- UniSTS:70148

AL033835 (e-PCR)
- UniSTS:93711

D1S3046 (e-PCR)
- UniSTS:28691

AB047969 (e-PCR)
- UniSTS:479766

A006P38 (e-PCR)
- UniSTS:60182

D1S159 (e-PCR)
- UniSTS:146967

D1S411 (e-PCR), detects polymorphism
- UniSTS:44858

D1S1886E (e-PCR)
- UniSTS:25661

AL009998 (e-PCR)
- UniSTS:32601

AL033922 (e-PCR)
- UniSTS:93798

D1S411 (e-PCR), detects polymorphism
- UniSTS:24171

RH120324 (e-PCR)
- UniSTS:132464

SHGC-30900 (e-PCR)
- UniSTS:6516

RH78155 (e-PCR)
- UniSTS:36474

SHGC-79960 (e-PCR)
- UniSTS:101523

MARC_11455-11456:1000490363:1 (e-PCR)
- UniSTS:267191

AL034132 (e-PCR)
- UniSTS:93897

AL033992 (e-PCR)
- UniSTS:93408

G09705 (e-PCR)
- UniSTS:49648

D1S3045 (e-PCR)
- UniSTS:58355

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cell-cell adhesion	IEA Inferred from Electronic Annotation more info	PubMed
involved_in embryo development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in establishment or maintenance of epithelial cell apical/basal polarity	IEA Inferred from Electronic Annotation more info	PubMed
involved_in neurotransmitter receptor transport postsynaptic membrane to endosome	IEA Inferred from Electronic Annotation more info	PubMed
involved_in neurotransmitter receptor transport, endosome to postsynaptic membrane	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of neuron projection development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in receptor clustering	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in adherens junction	IEA Inferred from Electronic Annotation more info	PubMed
located_in axon initial segment	IEA Inferred from Electronic Annotation more info	PubMed
located_in basolateral plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed
located_in postsynaptic density	IEA Inferred from Electronic Annotation more info	PubMed
located_in postsynaptic membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: leucine-rich repeat-containing protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

NC_071985.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Range

162986913..164065162 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063711876.1 → XP_063567946.1 leucine-rich repeat-containing protein 7 isoform X9
XM_054533117.2 → XP_054389092.1 leucine-rich repeat-containing protein 7 isoform X6
XM_054533085.2 → XP_054389060.1 leucine-rich repeat-containing protein 7 isoform X2
XM_054533095.2 → XP_054389070.1 leucine-rich repeat-containing protein 7 isoform X4
XM_024251952.3 → XP_024107720.2 leucine-rich repeat-containing protein 7 isoform X1

UniProtKB/TrEMBL

A0A2J8WPV3, H2N730
XM_054533091.2 → XP_054389066.1 leucine-rich repeat-containing protein 7 isoform X3
XM_054533140.2 → XP_054389115.1 leucine-rich repeat-containing protein 7 isoform X8
XM_054533128.2 → XP_054389103.1 leucine-rich repeat-containing protein 7 isoform X7
XM_054533152.1 → XP_054389127.1 leucine-rich repeat-containing protein 7 isoform X12
XM_054533106.2 → XP_054389081.1 leucine-rich repeat-containing protein 7 isoform X5
XM_054533145.2 → XP_054389120.1 leucine-rich repeat-containing protein 7 isoform X10
XM_054533149.2 → XP_054389124.1 leucine-rich repeat-containing protein 7 isoform X11
XM_054533163.2 → XP_054389138.1 leucine-rich repeat-containing protein 7 isoform X13

UniProtKB/TrEMBL

A0A2J8WPY0, A0A8I5UYU2