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XRN1 5'-3' exoribonuclease 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100449590, updated on 6-Jun-2024

Summary

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Gene symbol
XRN1
Gene description
5'-3' exoribonuclease 1
Locus tag
CR201_G0032489
See related
Ensembl:ENSPPYG00000014172
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 2 NC_085928.1 (151787378..151921886, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 3 NC_071988.1 (139592766..139727126, complement)

Chromosome 2 - NC_085928.1Genomic Context describing neighboring genes Neighboring gene transcription factor Dp-2 Neighboring gene U6 spliceosomal RNA Neighboring gene glycerol kinase 5 Neighboring gene U1 spliceosomal RNA Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 1-like Neighboring gene ATR serine/threonine kinase Neighboring gene uncharacterized LOC129058666 Neighboring gene plastin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5'-3' exoribonuclease 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085928.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    151787378..151921886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063722254.1 → XP_063578324.1  5'-3' exoribonuclease 1 isoform X4

    UniProtKB/TrEMBL
    A0A2J8TT90, A0A8I5YRM8

  2. XM_024245011.3 → XP_024100779.2  5'-3' exoribonuclease 1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8TT84, A0A663D8A9, H2PBM7

  3. XM_054552795.2 → XP_054408770.2  5'-3' exoribonuclease 1 isoform X7

    UniProtKB/TrEMBL
    A0A2J8TT84, A0A663D8A9, H2PBM7

  4. XM_024245013.3 → XP_024100781.2  5'-3' exoribonuclease 1 isoform X6

    UniProtKB/TrEMBL
    A0A2J8TT84, A0A663D8A9, H2PBM7

  5. XM_063722256.1 → XP_063578326.1  5'-3' exoribonuclease 1 isoform X10

    UniProtKB/TrEMBL
    A0A2J8TT84, A0A663D8A9, H2PBM7

  6. XM_009239377.4 → XP_009237652.2  5'-3' exoribonuclease 1 isoform X8

    UniProtKB/TrEMBL
    A0A2J8TT90, A0A8I5YRM8

  7. XM_024245012.3 → XP_024100780.2  5'-3' exoribonuclease 1 isoform X5

    UniProtKB/TrEMBL
    A0A2J8TT84, A0A663D8A9, H2PBM7

  8. XM_054552793.2 → XP_054408768.2  5'-3' exoribonuclease 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8TT84, A0A663D8A9, H2PBM7

  9. XM_063722255.1 → XP_063578325.1  5'-3' exoribonuclease 1 isoform X9

    UniProtKB/TrEMBL
    A0A2J8TT90, A0A8I5YRM8

  10. XM_009239374.4 → XP_009237649.2  5'-3' exoribonuclease 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8TT90, A0A8I5YRM8

RNA

  1. XR_008523940.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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