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SLC8B1 solute carrier family 8 member B1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100448959, updated on 6-Jun-2024

Summary

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Gene symbol
SLC8B1
Gene description
solute carrier family 8 member B1
Locus tag
CR201_G0001048
See related
Ensembl:ENSPPYG00000004988
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 10 NC_071995.2 (112122217..112159691, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 12 NC_071997.1 (112086157..112123631, complement)

Chromosome 10 - NC_071995.2Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 54 Neighboring gene RBPJ interacting and tubulin associated 1 Neighboring gene IQ motif containing D Neighboring gene two pore segment channel 1 Neighboring gene phospholipase B domain containing 2 Neighboring gene serine dehydratase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium:sodium antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium export from the mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial sodium/calcium exchanger protein
Names
sodium/potassium/calcium exchanger 6, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071995.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    112122217..112159691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054527637.1 → XP_054383612.1  mitochondrial sodium/calcium exchanger protein isoform X4

    UniProtKB/TrEMBL
    A0A2J8XKX5

  2. XM_054527636.2 → XP_054383611.1  mitochondrial sodium/calcium exchanger protein isoform X3

  3. XM_063712257.1 → XP_063568327.1  mitochondrial sodium/calcium exchanger protein isoform X2

  4. XM_054527634.2 → XP_054383609.1  mitochondrial sodium/calcium exchanger protein isoform X1

    UniProtKB/TrEMBL
    A0A2J8XKJ5, A0A2J8XKL2, A0A8I5T144, H2NIR8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials