LOC100442808 chimeric ERCC6-PGBD3 protein [Pongo abelii (Sumatran orangutan)] - Gene

Summary

Gene symbol: LOC100442808
Gene description: chimeric ERCC6-PGBD3 protein
Locus tag: CR201_G0048767
See related: Ensembl:ENSPPYG00000002254
Gene type: protein coding
RefSeq status: MODEL
Organism: Pongo abelii
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Also known as: ERCC6
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Genomic context

Location:: chromosome: 8

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2)	8	NC_071993.2 (56015362..56099515, complement)
RS_2023_04	previous assembly	NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1)	10	NC_071995.1 (52167488..52251017, complement)

Chromosome 8 - NC_071993.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH104261 (e-PCR)
- UniSTS:98586

G60405 (e-PCR)
- UniSTS:137511

D10S1321E (e-PCR)
- UniSTS:151349

RH26695 (e-PCR)
- UniSTS:89910

D10S1378E (e-PCR)
- UniSTS:151374

ERCC6_1944 (e-PCR)
- UniSTS:280657

D10S1766 (e-PCR)
- UniSTS:67929

RH66662 (e-PCR)
- UniSTS:58254

RH44808 (e-PCR)
- UniSTS:61612

STS-L04791 (e-PCR)
- UniSTS:8116

D10S238E (e-PCR)
- UniSTS:147404

SHGC-149029 (e-PCR)
- UniSTS:182235

RH98308 (e-PCR)
- UniSTS:85980

D10S2351 (e-PCR)
- UniSTS:23293

Homology

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP-dependent chromatin remodeler activity	IEA Inferred from Electronic Annotation more info	PubMed
enables sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in transcription-coupled nucleotide-excision repair	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: DNA excision repair protein ERCC-6; chimeric ERCC6-PGBD3 protein

Names: ERCC excision repair 6, chromatin remodeling factor; excision repair cross-complementing rodent repair deficiency, complementation group 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

NC_071993.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Range

56015362..56099515 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063727562.1 → XP_063583632.1 DNA excision repair protein ERCC-6 isoform X2

UniProtKB/TrEMBL

A0A2J8RT15, H2NAC0
XM_024253937.3 → XP_024109705.3 DNA excision repair protein ERCC-6 isoform X1

UniProtKB/TrEMBL

A0A2J8RT15, H2NAC0
XM_054522318.2 → XP_054378293.2 DNA excision repair protein ERCC-6 isoform X2

UniProtKB/TrEMBL

A0A2J8RT15, H2NAC0
XM_024253936.3 → XP_024109704.3 DNA excision repair protein ERCC-6 isoform X1

UniProtKB/TrEMBL

A0A2J8RT15, H2NAC0
XM_063727563.1 → XP_063583633.1 DNA excision repair protein ERCC-6 isoform X2

UniProtKB/TrEMBL

A0A2J8RT15, H2NAC0
XM_054522317.2 → XP_054378292.2 DNA excision repair protein ERCC-6 isoform X1

UniProtKB/TrEMBL

A0A2J8RT15, H2NAC0
XM_054522319.2 → XP_054378294.2 chimeric ERCC6-PGBD3 protein isoform X3

UniProtKB/TrEMBL

A0A2J8RT31, A0A8I5YSI4
XM_024253939.3 → XP_024109707.3 chimeric ERCC6-PGBD3 protein isoform X3

UniProtKB/TrEMBL

A0A2J8RT31, A0A8I5YSI4
XM_063727564.1 → XP_063583634.1 chimeric ERCC6-PGBD3 protein isoform X3

UniProtKB/TrEMBL

A0A2J8RT31, A0A8I5YSI4