CCNT1 cyclin T1 [Pongo abelii (Sumatran orangutan)] - Gene

Summary

Gene symbol: CCNT1
Gene description: cyclin T1
Locus tag: CR201_G0039546
See related: Ensembl:ENSPPYG00000036637
Gene type: protein coding
RefSeq status: MODEL
Organism: Pongo abelii
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2)	10	NC_071995.2 (46455632..46484380, complement)
RS_2023_04	previous assembly	NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1)	12	NC_071997.1 (46456506..46485252, complement)

Chromosome 10 - NC_071995.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

STS-H84164 (e-PCR)
- UniSTS:46351

RH104016 (e-PCR)
- UniSTS:98341

SHGC-33565 (e-PCR)
- UniSTS:55887

RH17417 (e-PCR)
- UniSTS:24937

CCNT1_2415 (e-PCR)
- UniSTS:280479

RH44408 (e-PCR)
- UniSTS:38568

PMC153984P1 (e-PCR)
- UniSTS:271280

CCNT1 (e-PCR)
- UniSTS:503997

PMC136632P1 (e-PCR)
- UniSTS:270800

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cyclin-dependent protein serine/threonine kinase activator activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in positive regulation of DNA-templated transcription, elongation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of cyclin/CDK positive transcription elongation factor complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: cyclin-T1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

NC_071995.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Range

46455632..46484380 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054527194.2 → XP_054383169.1 cyclin-T1 isoform X2

UniProtKB/TrEMBL

A0A8I5TRN5
XM_002823161.5 → XP_002823207.2 cyclin-T1 isoform X1

UniProtKB/TrEMBL

A0A2J8SYX0, A0A8I5TRN5, A0A8I5UKN7

Related

ENSPPYP00000035084.1

Conserved Domains (1) summary

cl28538
Location:32 → 217

CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]