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TFCP2 transcription factor CP2 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100437439, updated on 3-Apr-2024

Summary

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Gene symbol
TFCP2
Gene description
transcription factor CP2
Locus tag
CR201_G0039430
See related
Ensembl:ENSPPYG00000004522
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See TFCP2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 10 NC_071995.2 (48877693..48957538, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 12 NC_071997.1 (48878567..48958412, complement)

Chromosome 10 - NC_071995.2Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene LETM1 domain containing 1 Neighboring gene cysteine and serine rich nuclear protein 2 Neighboring gene prohibitin 1-like Neighboring gene U6 spliceosomal RNA Neighboring gene POU class 6 homeobox 1 Neighboring gene DAZ associated protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-globin transcription factor CP2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071995.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    48877693..48957538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063711781.1 → XP_063567851.1  alpha-globin transcription factor CP2 isoform X9

  2. XM_063711778.1 → XP_063567848.1  alpha-globin transcription factor CP2 isoform X7

  3. XM_063711777.1 → XP_063567847.1  alpha-globin transcription factor CP2 isoform X5

  4. XM_063711776.1 → XP_063567846.1  alpha-globin transcription factor CP2 isoform X4

    UniProtKB/TrEMBL
    A0A2J8SXV3, A0A6D2XK66, H2NHB0

  5. XM_063711773.1 → XP_063567843.1  alpha-globin transcription factor CP2 isoform X1

  6. XM_063711782.1 → XP_063567852.1  alpha-globin transcription factor CP2 isoform X11

  7. XM_054527225.1 → XP_054383200.1  alpha-globin transcription factor CP2 isoform X10

    UniProtKB/TrEMBL
    A0A2J8SXV8, A0A8I5TRM2

  8. XM_063711780.1 → XP_063567850.1  alpha-globin transcription factor CP2 isoform X9

  9. XM_054527224.1 → XP_054383199.1  alpha-globin transcription factor CP2 isoform X6

  10. XM_024257042.2 → XP_024112810.1  alpha-globin transcription factor CP2 isoform X4

    UniProtKB/TrEMBL
    A0A2J8SXV3, A0A6D2XK66, H2NHB0
    Related
    ENSPPYP00000005161.2
    Conserved Domains (2) summary
    cd09589
    Location:329 → 395
    SAM_TFCP2; SAM domain of TFCP2 transcription factors
    pfam04516
    Location:52 → 259
    CP2; CP2 transcription factor

  11. XM_063711779.1 → XP_063567849.1  alpha-globin transcription factor CP2 isoform X8

  12. XM_063711775.1 → XP_063567845.1  alpha-globin transcription factor CP2 isoform X3

  13. XM_063711774.1 → XP_063567844.1  alpha-globin transcription factor CP2 isoform X2

  14. XM_063711783.1 → XP_063567853.1  alpha-globin transcription factor CP2 isoform X12

Nucleotide Protein
Heading Accession and Version

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