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PRRT1 proline rich transmembrane protein 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100435134, updated on 3-Apr-2024

Summary

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Gene symbol
PRRT1
Gene description
proline rich transmembrane protein 1
Locus tag
CR201_G0054463
See related
Ensembl:ENSPPYG00000016481
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See PRRT1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 5 NC_071990.2 (32353741..32359466, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 6 NC_071991.1 (32300619..32306337, complement)

Chromosome 5 - NC_071990.2Genomic Context describing neighboring genes Neighboring gene activating transcription factor 6 beta Neighboring gene FKBP prolyl isomerase like Neighboring gene palmitoyl-protein thioesterase 2 Neighboring gene EGF like domain multiple 8 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 1 Neighboring gene ring finger protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proline-rich transmembrane protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071990.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    32353741..32359466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063725446.1 → XP_063581516.1  proline-rich transmembrane protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A663DDY3, A0A8I5TC64

  2. XM_054557345.2 → XP_054413320.1  proline-rich transmembrane protein 1 isoform X1

  3. XM_054557347.2 → XP_054413322.1  proline-rich transmembrane protein 1 isoform X1

  4. XM_054557346.2 → XP_054413321.1  proline-rich transmembrane protein 1 isoform X1

  5. XM_054557350.2 → XP_054413325.1  proline-rich transmembrane protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A2J8R302, A0A8I5YS12

  6. XM_002816690.6 → XP_002816736.1  proline-rich transmembrane protein 1 isoform X2

    See identical proteins and their annotated locations for XP_002816736.1

    UniProtKB/TrEMBL
    A0A663DDY3, A0A8I5TC64
    Related
    ENSPPYP00000027034.1
    Conserved Domains (1) summary
    pfam04505
    Location:219 → 286
    CD225; Interferon-induced transmembrane protein

  7. XM_063725447.1 → XP_063581517.1  proline-rich transmembrane protein 1 isoform X3

Nucleotide Protein
Heading Accession and Version

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