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ETV3 ETS variant 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100415072, updated on 2-Nov-2023

Summary

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Gene symbol
ETV3
Gene description
ETS variant 3
See related
Ensembl:ENSCJAG00000006548
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
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Genomic context

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Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 18 NC_071459.1 (11068864..11085616, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 18 NC_048400.1 (11084073..11100989, complement)

Chromosome 18 - NC_071459.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L26 Neighboring gene ETS variant transcription factor 3 like Neighboring gene translation initiation factor IF-2-like Neighboring gene 60S ribosomal protein L15-like Neighboring gene SLAM family member 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ETS translocation variant 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071459.1 Reference mCalJa1.2.pat.X

    Range
    11068864..11085616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002760123.5 → XP_002760169.1  ETS translocation variant 3

    See identical proteins and their annotated locations for XP_002760169.1

    UniProtKB/TrEMBL
    F7EJE7
    Related
    ENSCJAP00000012111.1
    Conserved Domains (2) summary
    smart00413
    Location:34 → 120
    ETS; erythroblast transformation specific domain
    cl26464
    Location:232 → 471
    Atrophin-1; Atrophin-1 family

  2. XM_008984644.3 → XP_008982892.1  ETS translocation variant 3

    See identical proteins and their annotated locations for XP_008982892.1

    UniProtKB/TrEMBL
    F7EJE7
    Conserved Domains (2) summary
    smart00413
    Location:34 → 120
    ETS; erythroblast transformation specific domain
    cl26464
    Location:232 → 471
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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