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CIC capicua transcriptional repressor [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100414495, updated on 6-Jun-2024

Summary

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Gene symbol
CIC
Gene description
capicua transcriptional repressor
See related
Ensembl:ENSCJAG00000012847
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See CIC in Genome Data Viewer
Location:
chromosome: 22
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (35885382..35913396)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (37208363..37236375)

Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene glycogen synthase kinase 3 alpha Neighboring gene ETS2 repressor factor Neighboring gene platelet activating factor acetylhydrolase 1b catalytic subunit 3 Neighboring gene proline rich 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein capicua homolog
Names
capicua homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071463.1 Reference mCalJa1.2.pat.X

    Range
    35885382..35913396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008988107.4 → XP_008986355.1  protein capicua homolog isoform X1

    UniProtKB/TrEMBL
    F7HII4
    Conserved Domains (5) summary
    PHA03247
    Location:1767 → 2194
    PHA03247; large tegument protein UL36; Provisional
    COG5648
    Location:1082 → 1226
    NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
    PRK14086
    Location:873 → 1049
    dnaA; chromosomal replication initiator protein DnaA
    cd01388
    Location:1110 → 1181
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:254 → 351
    DUF4819; Domain of unknown function (DUF4819)

  2. XM_054249561.1 → XP_054105536.1  protein capicua homolog isoform X2

    UniProtKB/TrEMBL
    F7HII4

  3. XM_054249562.1 → XP_054105537.1  protein capicua homolog isoform X3

    UniProtKB/TrEMBL
    F7HII4

  4. XM_054249563.1 → XP_054105538.1  protein capicua homolog isoform X4

    UniProtKB/TrEMBL
    F7HII4

  5. XM_054249564.1 → XP_054105539.1  protein capicua homolog isoform X5

    UniProtKB/TrEMBL
    F7HII4

  6. XM_017967923.3 → XP_017823412.1  protein capicua homolog isoform X1

    UniProtKB/TrEMBL
    F7HII4
    Conserved Domains (5) summary
    PHA03247
    Location:1767 → 2194
    PHA03247; large tegument protein UL36; Provisional
    COG5648
    Location:1082 → 1226
    NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
    PRK14086
    Location:873 → 1049
    dnaA; chromosomal replication initiator protein DnaA
    cd01388
    Location:1110 → 1181
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:254 → 351
    DUF4819; Domain of unknown function (DUF4819)

  7. XM_035284525.2 → XP_035140416.1  protein capicua homolog isoform X2

    UniProtKB/TrEMBL
    F7HII4
    Conserved Domains (5) summary
    PHA03247
    Location:1767 → 2194
    PHA03247; large tegument protein UL36; Provisional
    COG5648
    Location:1082 → 1226
    NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
    PRK14086
    Location:873 → 1049
    dnaA; chromosomal replication initiator protein DnaA
    cd01388
    Location:1110 → 1181
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:254 → 351
    DUF4819; Domain of unknown function (DUF4819)

  8. XM_035284526.2 → XP_035140417.1  protein capicua homolog isoform X3

    UniProtKB/TrEMBL
    F7HII4
    Conserved Domains (5) summary
    PHA03247
    Location:1767 → 2188
    PHA03247; large tegument protein UL36; Provisional
    COG5648
    Location:1082 → 1226
    NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
    PRK14086
    Location:873 → 1049
    dnaA; chromosomal replication initiator protein DnaA
    cd01388
    Location:1110 → 1181
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:254 → 351
    DUF4819; Domain of unknown function (DUF4819)

  9. XM_035284522.2 → XP_035140413.1  protein capicua homolog isoform X1

    UniProtKB/TrEMBL
    F7HII4
    Conserved Domains (5) summary
    PHA03247
    Location:1767 → 2194
    PHA03247; large tegument protein UL36; Provisional
    COG5648
    Location:1082 → 1226
    NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
    PRK14086
    Location:873 → 1049
    dnaA; chromosomal replication initiator protein DnaA
    cd01388
    Location:1110 → 1181
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:254 → 351
    DUF4819; Domain of unknown function (DUF4819)

  10. XM_035284528.2 → XP_035140419.1  protein capicua homolog isoform X7

    UniProtKB/TrEMBL
    U3CX73, U3F0F4
    Conserved Domains (3) summary
    PHA03247
    Location:856 → 1283
    PHA03247; large tegument protein UL36; Provisional
    COG5648
    Location:171 → 315
    NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
    cd01388
    Location:199 → 270
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  11. XM_002762192.6 → XP_002762238.2  protein capicua homolog isoform X6

    See identical proteins and their annotated locations for XP_002762238.2

    UniProtKB/TrEMBL
    F7D5W2, U3CX73, U3F0F4
    Related
    ENSCJAP00000023625.1
    Conserved Domains (3) summary
    COG5648
    Location:171 → 315
    NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
    cd01388
    Location:199 → 270
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    cl26464
    Location:856 → 1283
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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