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SCFD1 sec1 family domain containing 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100413346, updated on 8-Mar-2024

Summary

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Gene symbol
SCFD1
Gene description
sec1 family domain containing 1
See related
Ensembl:ENSCJAG00000005938
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 10 NC_071451.1 (60883823..60995051)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 10 NC_048392.1 (61523402..61633802)

Chromosome 10 - NC_071451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118144910 Neighboring gene uncharacterized LOC118144909 Neighboring gene G2/M-phase specific E3 ubiquitin protein ligase Neighboring gene developmental pluripotency-associated 5 protein-like Neighboring gene cochlin Neighboring gene striatin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sec1 family domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071451.1 Reference mCalJa1.2.pat.X

    Range
    60883823..60995051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009005888.4 → XP_009004136.1  sec1 family domain-containing protein 1 isoform X1

    Conserved Domains (1) summary
    pfam00995
    Location:46 → 464
    Sec1; Sec1 family

  2. XM_002753782.5 → XP_002753828.2  sec1 family domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    F7ISQ5
    Related
    ENSCJAP00000011209.1
    Conserved Domains (1) summary
    pfam00995
    Location:46 → 464
    Sec1; Sec1 family

  3. XM_009005890.4 → XP_009004138.1  sec1 family domain-containing protein 1 isoform X4

    Conserved Domains (1) summary
    pfam00995
    Location:46 → 464
    Sec1; Sec1 family

  4. XM_035260264.2 → XP_035116155.1  sec1 family domain-containing protein 1 isoform X5

    Conserved Domains (1) summary
    pfam00995
    Location:46 → 609
    Sec1; Sec1 family

  5. XM_009005891.4 → XP_009004139.1  sec1 family domain-containing protein 1 isoform X6

    Conserved Domains (1) summary
    pfam00995
    Location:16 → 403
    Sec1; Sec1 family

  6. XM_002753784.4 → XP_002753830.1  sec1 family domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    F7HZH1
    Related
    ENSCJAP00000011177.2
    Conserved Domains (1) summary
    pfam00995
    Location:16 → 403
    Sec1; Sec1 family

  7. XM_009005889.4 → XP_009004137.1  sec1 family domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    pfam00995
    Location:19 → 625
    Sec1; Sec1 family

  8. XM_035260267.2 → XP_035116158.1  sec1 family domain-containing protein 1 isoform X8

    Conserved Domains (1) summary
    pfam00995
    Location:1 → 558
    Sec1; Sec1 family

  9. XM_035260263.2 → XP_035116154.1  sec1 family domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    pfam00995
    Location:19 → 625
    Sec1; Sec1 family
Nucleotide Protein
Heading Accession and Version

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