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PODN podocan [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100412736, updated on 8-Mar-2024

Summary

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Gene symbol
PODN
Gene description
podocan
See related
Ensembl:ENSCJAG00000004449
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See PODN in Genome Data Viewer
Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 7 NC_071448.1 (87269445..87303605)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 7 NC_048389.1 (88753807..88787965)

Chromosome 7 - NC_071448.1Genomic Context describing neighboring genes Neighboring gene sterol carrier protein 2 Neighboring gene tubulin beta chain-like Neighboring gene HIG1 domain family member 1A, mitochondrial-like Neighboring gene HIG1 domain family member 1A, mitochondrial-like Neighboring gene solute carrier family 1 member 7 Neighboring gene carnitine palmitoyltransferase 2 Neighboring gene CXXC motif containing zinc binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
podocan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071448.1 Reference mCalJa1.2.pat.X

    Range
    87269445..87303605
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035251508.2 → XP_035107399.1  podocan isoform X2

    Conserved Domains (3) summary
    PRK15370
    Location:93 → 331
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    PLN00113
    Location:141 → 605
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:123 → 144
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_054236241.1 → XP_054092216.1  podocan isoform X3

  3. XM_035251510.2 → XP_035107401.1  podocan isoform X3

    Conserved Domains (3) summary
    PRK15370
    Location:70 → 308
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    PLN00113
    Location:118 → 582
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:100 → 121
    LRR_RI; leucine-rich repeat [structural motif]

  4. XM_035251509.2 → XP_035107400.1  podocan isoform X3

    Conserved Domains (3) summary
    PRK15370
    Location:70 → 308
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    PLN00113
    Location:118 → 582
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:100 → 121
    LRR_RI; leucine-rich repeat [structural motif]

  5. XM_002750838.5 → XP_002750884.2  podocan isoform X1

    UniProtKB/TrEMBL
    F7HUB0, F7HWR7, F7HWU5, U3BEY0
    Conserved Domains (3) summary
    PRK15370
    Location:118 → 356
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    PLN00113
    Location:166 → 630
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:148 → 169
    LRR_RI; leucine-rich repeat [structural motif]

RNA

  1. XR_621781.4 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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