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LNPK lunapark, ER junction formation factor [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100412602, updated on 3-Apr-2024

Summary

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Gene symbol
LNPK
Gene description
lunapark, ER junction formation factor
See related
Ensembl:ENSCJAG00000008226
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
KIAA1715
Orthologs
human mouse all
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Genomic context

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See LNPK in Genome Data Viewer
Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 6 NC_071447.1 (50199831..50268182)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 6 NC_048388.1 (51142903..51212985)

Chromosome 6 - NC_071447.1Genomic Context describing neighboring genes Neighboring gene homeobox D13 Neighboring gene even-skipped homeobox 2 Neighboring gene S-phase kinase-associated protein 1-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum tubular network organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum tubular network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoplasmic reticulum junction formation protein lunapark
Names
protein lunapark

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071447.1 Reference mCalJa1.2.pat.X

    Range
    50199831..50268182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035304479.2 → XP_035160370.1  endoplasmic reticulum junction formation protein lunapark isoform X1

    UniProtKB/TrEMBL
    A0A5F4W4K7, U3DLJ9
    Conserved Domains (2) summary
    PHA03247
    Location:150 → 250
    PHA03247; large tegument protein UL36; Provisional
    pfam10058
    Location:255 → 305
    zinc_ribbon_10; Predicted integral membrane zinc-ribbon metal-binding protein

  2. XM_054257508.1 → XP_054113483.1  endoplasmic reticulum junction formation protein lunapark isoform X5

  3. XM_035304481.2 → XP_035160372.1  endoplasmic reticulum junction formation protein lunapark isoform X4

    UniProtKB/TrEMBL
    A0A2R8MIZ1
    Conserved Domains (2) summary
    PHA03247
    Location:150 → 250
    PHA03247; large tegument protein UL36; Provisional
    pfam10058
    Location:255 → 305
    zinc_ribbon_10; Predicted integral membrane zinc-ribbon metal-binding protein

  4. XM_035304478.2 → XP_035160369.1  endoplasmic reticulum junction formation protein lunapark isoform X1

    UniProtKB/TrEMBL
    A0A5F4W4K7, U3DLJ9
    Conserved Domains (2) summary
    PHA03247
    Location:150 → 250
    PHA03247; large tegument protein UL36; Provisional
    pfam10058
    Location:255 → 305
    zinc_ribbon_10; Predicted integral membrane zinc-ribbon metal-binding protein

  5. XM_008998664.4 → XP_008996912.1  endoplasmic reticulum junction formation protein lunapark isoform X2

    See identical proteins and their annotated locations for XP_008996912.1

    UniProtKB/TrEMBL
    A0A2R8MIZ1
    Conserved Domains (2) summary
    pfam10058
    Location:255 → 305
    zinc_ribbon_10; Predicted integral membrane zinc-ribbon metal-binding protein
    cl22974
    Location:156 → 263
    HpaP; Type III secretion protein (HpaP)

  6. XM_008998666.4 → XP_008996914.1  endoplasmic reticulum junction formation protein lunapark isoform X3

    UniProtKB/TrEMBL
    A0A2R8MIZ1
    Conserved Domains (2) summary
    pfam10058
    Location:255 → 305
    zinc_ribbon_10; Predicted integral membrane zinc-ribbon metal-binding protein
    cl22974
    Location:156 → 263
    HpaP; Type III secretion protein (HpaP)

  7. XM_035304480.2 → XP_035160371.1  endoplasmic reticulum junction formation protein lunapark isoform X1

    UniProtKB/TrEMBL
    A0A5F4W4K7, U3DLJ9
    Conserved Domains (2) summary
    PHA03247
    Location:150 → 250
    PHA03247; large tegument protein UL36; Provisional
    pfam10058
    Location:255 → 305
    zinc_ribbon_10; Predicted integral membrane zinc-ribbon metal-binding protein
Nucleotide Protein
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