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TMTC3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100411205, updated on 8-Mar-2024

Summary

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Gene symbol
TMTC3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
See related
Ensembl:ENSCJAG00000019685
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See TMTC3 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (89457970..89515859, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (90546103..90604822, complement)

Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene regulator of nonsense transcripts 1-like Neighboring gene E2F-associated phosphoprotein-like Neighboring gene centrosomal protein 290 Neighboring gene chromosome 9 C12orf50 homolog Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1 Neighboring gene 40S ribosomal protein S4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC3
Names
transmembrane and TPR repeat-containing protein 3
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071450.1 Reference mCalJa1.2.pat.X

    Range
    89457970..89515859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002752834.5 → XP_002752880.1  protein O-mannosyl-transferase TMTC3 isoform X1

    See identical proteins and their annotated locations for XP_002752880.1

    UniProtKB/TrEMBL
    A0A8J8Y5H9, F7F981, U3EIN5
    Related
    ENSCJAP00000036574.1
    Conserved Domains (4) summary
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:435 → 802
    TPR_11; TPR repeat
    cl28891
    Location:794 → 837
    ParB_N_Srx; ParB N-terminal domain and sulfiredoxin protein-related families

  2. XM_035257212.2 → XP_035113103.1  protein O-mannosyl-transferase TMTC3 isoform X2

    UniProtKB/TrEMBL
    A0A8J8Y5H9
    Conserved Domains (4) summary
    TIGR02917
    Location:346 → 713
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:441 → 468
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:170 → 242
    DUF1736; Domain of unknown function (DUF1736)
    cl28891
    Location:705 → 748
    ParB_N_Srx; ParB N-terminal domain and sulfiredoxin protein-related families
Nucleotide Protein
Heading Accession and Version

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