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C9H12orf57 chromosome 9 C12orf57 homolog [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100409874, updated on 8-Mar-2024

Summary

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Gene symbol
C9H12orf57
Gene description
chromosome 9 C12orf57 homolog
See related
Ensembl:ENSCJAG00000007272
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See C9H12orf57 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (19303903..19306471)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (19163845..19166403)

Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene prolyl 3-hydroxylase 3 Neighboring gene leucine rich repeat containing 23 Neighboring gene enolase 2 Neighboring gene prohibitin 2 Neighboring gene U7 small nuclear RNA Neighboring gene atrophin 1 Neighboring gene U6 spliceosomal RNA Neighboring gene protein tyrosine phosphatase non-receptor type 6 Neighboring gene uncharacterized LOC103795159

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in post-embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein C10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071450.1 Reference mCalJa1.2.pat.X

    Range
    19303903..19306471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054238078.1 → XP_054094053.1  protein C10 isoform X2

  2. XM_002752270.5 → XP_002752316.1  protein C10 isoform X1

    See identical proteins and their annotated locations for XP_002752316.1

    UniProtKB/TrEMBL
    U3BEU4, U3DJE3
    Related
    ENSCJAP00000013544.1
    Conserved Domains (1) summary
    pfam14974
    Location:11 → 113
    P_C10; Protein C10
Nucleotide Protein
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