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SFTPB surfactant protein B [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100409425, updated on 8-Mar-2024

Summary

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Gene symbol
SFTPB
Gene description
surfactant protein B
See related
Ensembl:ENSCJAG00000019581
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See SFTPB in Genome Data Viewer
Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 14 NC_071455.1 (25388013..25398062)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 14 NC_048396.1 (24357097..24367149)

Chromosome 14 - NC_071455.1Genomic Context describing neighboring genes Neighboring gene probable G-protein coupled receptor 160 Neighboring gene mitochondrial import inner membrane translocase subunit TIM14-like Neighboring gene ubiquitin specific peptidase 39 Neighboring gene chromosome 14 C2orf68 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071455.1 Reference mCalJa1.2.pat.X

    Range
    25388013..25398062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008980397.4 → XP_008978645.1  pulmonary surfactant-associated protein B isoform X4

    Conserved Domains (4) summary
    smart00741
    Location:67 → 143
    SapB; Saposin (B) Domains
    pfam03489
    Location:112 → 143
    SapB_2; Saposin-like type B, region 2
    pfam05184
    Location:69 → 103
    SapB_1; Saposin-like type B, region 1
    cl02494
    Location:31 → 61
    SapA; Saposin A-type domain

  2. XM_035272042.2 → XP_035127933.2  pulmonary surfactant-associated protein B isoform X1

  3. XM_008980396.4 → XP_008978644.2  pulmonary surfactant-associated protein B isoform X3

    UniProtKB/TrEMBL
    F7GMV3

  4. XM_035272043.2 → XP_035127934.2  pulmonary surfactant-associated protein B isoform X2

Nucleotide Protein
Heading Accession and Version

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