TRIM55 tripartite motif containing 55 [Callithrix jacchus (white-tufted-ear marmoset)] - Gene

Summary

Gene symbol: TRIM55
Gene description: tripartite motif containing 55
See related: Ensembl:ENSCJAG00000009384
Gene type: protein coding
RefSeq status: MODEL
Organism: Callithrix jacchus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 16

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2023_03	current	mCalJa1.2.pat.X (GCF_011100555.1)	16	NC_071457.1 (20272061..20319978)
105	previous assembly	Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1)	16	NC_048398.1 (20378729..20426644)

Chromosome 16 - NC_071457.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: tripartite motif-containing protein 55

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

NC_071457.1 Reference mCalJa1.2.pat.X

Range

20272061..20319978

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_002758953.5 → XP_002758999.2 tripartite motif-containing protein 55 isoform X2

UniProtKB/TrEMBL

A0A5F4W5M9, F7I0V3

Conserved Domains (3) summary

smart00502
Location:168 → 294

BBC; B-Box C-terminal domain

cd16760
Location:21 → 84

RING-HC_MuRF2; RING finger, HC subclass, found in muscle-specific RING finger protein 2 (MuRF-2) and similar proteins

cd19832
Location:122 → 166

Bbox2_MuRF2_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 2 (MuRF-2) and similar proteins
XM_002758952.6 → XP_002758998.2 tripartite motif-containing protein 55 isoform X1

UniProtKB/TrEMBL

F7I337, U3E739

Conserved Domains (3) summary

smart00502
Location:168 → 294

BBC; B-Box C-terminal domain

cd16760
Location:21 → 84

RING-HC_MuRF2; RING finger, HC subclass, found in muscle-specific RING finger protein 2 (MuRF-2) and similar proteins

cd19832
Location:122 → 166

Bbox2_MuRF2_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 2 (MuRF-2) and similar proteins
XM_002758954.4 → XP_002759000.1 tripartite motif-containing protein 55 isoform X3

See identical proteins and their annotated locations for XP_002759000.1

UniProtKB/TrEMBL

F7I344, U3DH77

Related

ENSCJAP00000017200.2

Conserved Domains (3) summary

pfam00643
Location:119 → 161

zf-B_box; B-box zinc finger

cd16760
Location:21 → 84

RING-HC_MuRF2; RING finger, HC subclass, found in muscle-specific RING finger protein 2 (MuRF-2) and similar proteins

cl25407
Location:168 → 294

ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)