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FAT1 FAT atypical cadherin 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100407761, updated on 6-Jun-2024

Summary

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Gene symbol
FAT1
Gene description
FAT atypical cadherin 1
See related
Ensembl:ENSCJAG00000020301
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 3 NC_071444.1 (3006754..3147710)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 3 NC_048385.1 (3261766..3402975)

Chromosome 3 - NC_071444.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC118152123 Neighboring gene U6 spliceosomal RNA Neighboring gene melatonin receptor 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin Fat 1
Names
FAT tumor suppressor homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071444.1 Reference mCalJa1.2.pat.X

    Range
    3006754..3147710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035292462.2 → XP_035148353.2  protocadherin Fat 1 isoform X6

    UniProtKB/TrEMBL
    A0A8I3W125

  2. XM_035292455.2 → XP_035148346.2  protocadherin Fat 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3WRF3, U3E9V7

  3. XM_035292464.2 → XP_035148355.2  protocadherin Fat 1 isoform X7

    UniProtKB/TrEMBL
    A0A8I3W125

  4. XM_035292456.2 → XP_035148347.2  protocadherin Fat 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3WSJ4, U3E9V7

  5. XM_035292460.2 → XP_035148351.2  protocadherin Fat 1 isoform X4

    UniProtKB/TrEMBL
    F6UR80, U3E9V7

  6. XM_035292458.2 → XP_035148349.2  protocadherin Fat 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I3WHY6, U3E9V7

  7. XM_054252681.1 → XP_054108656.1  protocadherin Fat 1 isoform X5

    UniProtKB/TrEMBL
    U3E9V7

  8. XM_035292454.2 → XP_035148345.2  protocadherin Fat 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3WRF3, U3E9V7

  9. XM_035292459.2 → XP_035148350.2  protocadherin Fat 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I3WHY6, U3E9V7

  10. XM_035292461.2 → XP_035148352.2  protocadherin Fat 1 isoform X5

    UniProtKB/TrEMBL
    U3E9V7

RNA

  1. XR_008479931.1 RNA Sequence

Nucleotide Protein
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