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DPF1 double PHD fingers 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100404510, updated on 8-Mar-2024

Summary

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Gene symbol
DPF1
Gene description
double PHD fingers 1
See related
Ensembl:ENSCJAG00000013515
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (32334640..32353299, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (33743305..33761959, complement)

Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene WD repeat domain 87 Neighboring gene signal induced proliferation associated 1 like 3 Neighboring gene chromosome 22 C19orf33 homolog Neighboring gene serine peptidase inhibitor, Kunitz type 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein neuro-d4
Names
D4, zinc and double PHD fingers family 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071463.1 Reference mCalJa1.2.pat.X

    Range
    32334640..32353299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035284770.2 → XP_035140661.1  zinc finger protein neuro-d4 isoform X11

    Conserved Domains (4) summary
    COG5189
    Location:221 → 255
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:346 → 391
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:288 → 345
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:50 → 116
    Requiem_N; N-terminal domain of DPF2/REQ

  2. XM_035284767.2 → XP_035140658.1  zinc finger protein neuro-d4 isoform X8

    Conserved Domains (4) summary
    COG5189
    Location:221 → 255
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:346 → 401
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:288 → 345
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:50 → 116
    Requiem_N; N-terminal domain of DPF2/REQ

  3. XM_035284765.2 → XP_035140656.1  zinc finger protein neuro-d4 isoform X6

    Conserved Domains (4) summary
    COG5189
    Location:221 → 255
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:363 → 408
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:305 → 362
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:50 → 116
    Requiem_N; N-terminal domain of DPF2/REQ

  4. XM_035284761.2 → XP_035140652.1  zinc finger protein neuro-d4 isoform X2

    Conserved Domains (4) summary
    COG5189
    Location:221 → 255
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:363 → 418
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:305 → 362
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:50 → 116
    Requiem_N; N-terminal domain of DPF2/REQ

  5. XM_035284769.2 → XP_035140660.1  zinc finger protein neuro-d4 isoform X10

    Conserved Domains (4) summary
    COG5189
    Location:223 → 257
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:348 → 393
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:290 → 347
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:50 → 116
    Requiem_N; N-terminal domain of DPF2/REQ

  6. XM_035284766.2 → XP_035140657.1  zinc finger protein neuro-d4 isoform X7

    Conserved Domains (4) summary
    COG5189
    Location:223 → 257
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:348 → 403
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:290 → 347
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:50 → 116
    Requiem_N; N-terminal domain of DPF2/REQ

  7. XM_035284762.2 → XP_035140653.1  zinc finger protein neuro-d4 isoform X3

    Conserved Domains (4) summary
    COG5189
    Location:223 → 257
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:365 → 410
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:307 → 364
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:50 → 116
    Requiem_N; N-terminal domain of DPF2/REQ

  8. XM_035284759.2 → XP_035140650.1  zinc finger protein neuro-d4 isoform X1

    Conserved Domains (4) summary
    COG5189
    Location:223 → 257
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:365 → 420
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:307 → 364
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:50 → 116
    Requiem_N; N-terminal domain of DPF2/REQ

  9. XM_035284774.2 → XP_035140665.1  zinc finger protein neuro-d4 isoform X13

    Conserved Domains (4) summary
    COG5189
    Location:130 → 164
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:272 → 317
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:214 → 271
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:1 → 23
    Requiem_N; N-terminal domain of DPF2/REQ

  10. XM_035284775.2 → XP_035140666.1  zinc finger protein neuro-d4 isoform X12

    Conserved Domains (4) summary
    COG5189
    Location:130 → 164
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:272 → 327
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:214 → 271
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:1 → 23
    Requiem_N; N-terminal domain of DPF2/REQ

  11. XM_035284768.2 → XP_035140659.1  zinc finger protein neuro-d4 isoform X9

    UniProtKB/TrEMBL
    F6TKP7, U3EED3
    Conserved Domains (4) summary
    COG5189
    Location:212 → 246
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:354 → 399
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:296 → 353
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:39 → 105
    Requiem_N; N-terminal domain of DPF2/REQ

  12. XM_035284764.2 → XP_035140655.1  zinc finger protein neuro-d4 isoform X5

    UniProtKB/TrEMBL
    A0A5K1VBC6, U3C2H7
    Conserved Domains (4) summary
    COG5189
    Location:212 → 246
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:354 → 409
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:296 → 353
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:39 → 105
    Requiem_N; N-terminal domain of DPF2/REQ

  13. XM_035284763.2 → XP_035140654.1  zinc finger protein neuro-d4 isoform X4

    Conserved Domains (4) summary
    COG5189
    Location:213 → 247
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:355 → 410
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:297 → 354
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:40 → 106
    Requiem_N; N-terminal domain of DPF2/REQ

  14. XM_035284772.2 → XP_035140663.1  zinc finger protein neuro-d4 isoform X12

    Conserved Domains (4) summary
    COG5189
    Location:130 → 164
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:272 → 327
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:214 → 271
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:1 → 23
    Requiem_N; N-terminal domain of DPF2/REQ

  15. XM_035284771.2 → XP_035140662.1  zinc finger protein neuro-d4 isoform X12

    Conserved Domains (4) summary
    COG5189
    Location:130 → 164
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:272 → 327
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:214 → 271
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:1 → 23
    Requiem_N; N-terminal domain of DPF2/REQ
Nucleotide Protein
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