U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GATAD2B GATA zinc finger domain containing 2B [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100399639, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
GATAD2B
Gene description
GATA zinc finger domain containing 2B
See related
Ensembl:ENSCJAG00000010131
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See GATAD2B in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 18 NC_071459.1 (7794538..7915868, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 18 NC_048400.1 (7802763..7924190, complement)

Chromosome 18 - NC_071459.1Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 3 Neighboring gene small nucleolar RNA U13 Neighboring gene solute carrier family 27 member 3 Neighboring gene histone H3.3A Neighboring gene 60S ribosomal protein L30-like Neighboring gene uncharacterized LOC118149243 Neighboring gene DENN domain containing 4B Neighboring gene CREB regulated transcription coactivator 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcriptional repressor p66-beta

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071459.1 Reference mCalJa1.2.pat.X

    Range
    7794538..7915868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054247735.1 → XP_054103710.1  transcriptional repressor p66-beta isoform X2

  2. XM_054247737.1 → XP_054103712.1  transcriptional repressor p66-beta isoform X3

    UniProtKB/TrEMBL
    F7H0M8, U3CSY2

  3. XM_054247738.1 → XP_054103713.1  transcriptional repressor p66-beta isoform X3

    UniProtKB/TrEMBL
    F7H0M8, U3CSY2

  4. XM_035279938.2 → XP_035135829.1  transcriptional repressor p66-beta isoform X1

    Conserved Domains (2) summary
    pfam00320
    Location:419 → 453
    GATA; GATA zinc finger
    pfam16563
    Location:159 → 194
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.