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HOXA3 homeobox A3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100398375, updated on 3-Apr-2024

Summary

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Gene symbol
HOXA3
Gene description
homeobox A3
See related
Ensembl:ENSCJAG00000008046
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See HOXA3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 8 NC_071449.1 (28263330..28296427)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 8 NC_048390.1 (29047782..29093978)

Chromosome 8 - NC_071449.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103794765 Neighboring gene homeobox A6 Neighboring gene homeobox A5 Neighboring gene uncharacterized LOC128928402 Neighboring gene homeobox A4 Neighboring gene WAS/WASL-interacting protein family member 3 Neighboring gene homeobox A2 Neighboring gene uncharacterized LOC103794762

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-A3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071449.1 Reference mCalJa1.2.pat.X

    Range
    28263330..28296427
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035253565.2 → XP_035109456.1  homeobox protein Hox-A3

    UniProtKB/TrEMBL
    B0VXK4, F7I6N4, U3BXR1
    Conserved Domains (3) summary
    COG5576
    Location:181 → 308
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:195 → 248
    Homeobox; Homeobox domain
    pfam13293
    Location:378 → 441
    DUF4074; Domain of unknown function (DUF4074)

  2. XM_054237138.1 → XP_054093113.1  homeobox protein Hox-A3

    UniProtKB/TrEMBL
    B0VXK4, F7I6N4

  3. XM_035253563.2 → XP_035109454.1  homeobox protein Hox-A3

    UniProtKB/TrEMBL
    B0VXK4, F7I6N4, U3BXR1
    Conserved Domains (3) summary
    COG5576
    Location:181 → 308
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:195 → 248
    Homeobox; Homeobox domain
    pfam13293
    Location:378 → 441
    DUF4074; Domain of unknown function (DUF4074)

  4. XM_054237137.1 → XP_054093112.1  homeobox protein Hox-A3

    UniProtKB/TrEMBL
    B0VXK4, F7I6N4

  5. XM_035253566.2 → XP_035109457.1  homeobox protein Hox-A3

    UniProtKB/TrEMBL
    B0VXK4, F7I6N4, U3BXR1
    Conserved Domains (3) summary
    COG5576
    Location:181 → 308
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:195 → 248
    Homeobox; Homeobox domain
    pfam13293
    Location:378 → 441
    DUF4074; Domain of unknown function (DUF4074)
Nucleotide Protein
Heading Accession and Version

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