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ATP6V1C1 ATPase H+ transporting V1 subunit C1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100395645, updated on 6-Jun-2024

Summary

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Gene symbol
ATP6V1C1
Gene description
ATPase H+ transporting V1 subunit C1
See related
Ensembl:ENSCJAG00000016100
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See ATP6V1C1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 16 NC_071457.1 (92055999..92107811, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 16 NC_048398.1 (92188453..92238615, complement)

Chromosome 16 - NC_071457.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly factor 4 homolog, mitochondrial-like Neighboring gene BAALC binder of MAP3K1 and KLF4 Neighboring gene U7 small nuclear RNA Neighboring gene PHD finger-like domain-containing protein 5A Neighboring gene mitotic spindle assembly checkpoint protein MAD1-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of vacuolar proton-transporting V-type ATPase, V1 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit C 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071457.1 Reference mCalJa1.2.pat.X

    Range
    92055999..92107811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054246349.1 → XP_054102324.1  V-type proton ATPase subunit C 1 isoform X2

    UniProtKB/TrEMBL
    A0A2R8M5Z4

  2. XM_002759317.5 → XP_002759363.1  V-type proton ATPase subunit C 1 isoform X1

    See identical proteins and their annotated locations for XP_002759363.1

    UniProtKB/TrEMBL
    A0A2R8M5Z4, F7INY1
    Related
    ENSCJAP00000029697.2
    Conserved Domains (2) summary
    cd14785
    Location:56 → 76
    V-ATPase_C; 3-helical coiled coil [structural motif]
    pfam03223
    Location:5 → 370
    V-ATPase_C; V-ATPase subunit C

  3. XM_035276841.2 → XP_035132732.1  V-type proton ATPase subunit C 1 isoform X1

    UniProtKB/TrEMBL
    A0A2R8M5Z4, F7INY1
    Conserved Domains (2) summary
    cd14785
    Location:56 → 76
    V-ATPase_C; 3-helical coiled coil [structural motif]
    pfam03223
    Location:5 → 370
    V-ATPase_C; V-ATPase subunit C

  4. XM_017965646.3 → XP_017821135.1  V-type proton ATPase subunit C 1 isoform X1

    UniProtKB/TrEMBL
    A0A2R8M5Z4, F7INY1
    Conserved Domains (2) summary
    cd14785
    Location:56 → 76
    V-ATPase_C; 3-helical coiled coil [structural motif]
    pfam03223
    Location:5 → 370
    V-ATPase_C; V-ATPase subunit C
Nucleotide Protein
Heading Accession and Version

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