TRIM28 tripartite motif containing 28 [Callithrix jacchus (white-tufted-ear marmoset)] - Gene

Summary

Gene symbol: TRIM28
Gene description: tripartite motif containing 28
See related: Ensembl:ENSCJAG00000000240
Gene type: protein coding
RefSeq status: MODEL
Organism: Callithrix jacchus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs: human mouse all
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Annotation release	Status	Assembly	Chr	Location
RS_2023_03	current	mCalJa1.2.pat.X (GCF_011100555.1)	22	NC_071463.1 (49781196..49808371)
105	previous assembly	Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1)	22	NC_048404.1 (51195480..51202471)

Chromosome 22 - NC_071463.1 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Submit: New GeneRIF Correction

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed
enables transcription corepressor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

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The following sections contain reference sequences that belong to a specific genome build. Explain

XM_054250429.1 → XP_054106404.1 transcription intermediary factor 1-beta isoform X1

UniProtKB/TrEMBL

F7G1E2, U3E7D2
XM_008988852.4 → XP_008987100.1 transcription intermediary factor 1-beta isoform X2

See identical proteins and their annotated locations for XP_008987100.1

UniProtKB/TrEMBL

U3E3Y4, U3E7D2

Related

ENSCJAP00000000432.2

Conserved Domains (6) summary

cd05502
Location:695 → 801

Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...

smart00502
Location:252 → 378

BBC; B-Box C-terminal domain

smart00336
Location:148 → 184

BBOX; B-Box-type zinc finger

cd00021
Location:207 → 245

BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

cd15623
Location:626 → 668

PHD_TIF1beta; PHD finger found in transcription intermediary factor 1-beta (TIF1-beta)

cd16765
Location:62 → 124

RING-HC_TIF1beta; RING finger, HC subclass, found in transcription inknown asiary factor 1-beta (TIF1-beta)
XM_054250430.1 → XP_054106405.1 transcription intermediary factor 1-beta isoform X1

UniProtKB/TrEMBL

F7G1E2, U3E7D2