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CALCA calcitonin-related polypeptide alpha [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100394886, updated on 2-Nov-2023

Summary

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Gene symbol
CALCA
Gene description
calcitonin-related polypeptide alpha
See related
Ensembl:ENSCJAG00000009757
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
CALCB
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Genomic context

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Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 11 NC_071452.1 (77576671..77580197, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 11 NC_048393.1 (78761135..78764678, complement)

Chromosome 11 - NC_071452.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 3B Neighboring gene cytochrome P450, family 2, subfamily R, polypeptide 1 Neighboring gene purine nucleoside phosphorylase-like Neighboring gene calcitonin related polypeptide beta Neighboring gene INSC spindle orientation adaptor protein Neighboring gene uncharacterized LOC103796229

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcitonin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcitonin
Names
calcitonin gene-related peptide 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071452.1 Reference mCalJa1.2.pat.X

    Range
    77576671..77580197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002754995.6 → XP_002755041.2  calcitonin

    See identical proteins and their annotated locations for XP_002755041.2

    UniProtKB/TrEMBL
    F7IR69, U3EPP1
    Conserved Domains (1) summary
    pfam00214
    Location:1 → 116
    Calc_CGRP_IAPP; Calcitonin / CGRP / IAPP family

  2. XM_009007720.3 → XP_009005968.1  calcitonin

    See identical proteins and their annotated locations for XP_009005968.1

    UniProtKB/TrEMBL
    F7IR69, U3EPP1
    Related
    ENSCJAP00000017911.2
    Conserved Domains (1) summary
    pfam00214
    Location:1 → 116
    Calc_CGRP_IAPP; Calcitonin / CGRP / IAPP family
Nucleotide Protein
Heading Accession and Version

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