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BRD1 bromodomain containing 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100394079, updated on 8-Mar-2024

Summary

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Gene symbol
BRD1
Gene description
bromodomain containing 1
See related
Ensembl:ENSCJAG00000016639
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 1 NC_071442.1 (215913358..215959899, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 1 NC_048383.1 (217008606..217055253, complement)

Chromosome 1 - NC_071442.1Genomic Context describing neighboring genes Neighboring gene MIR3667 host gene Neighboring gene uncharacterized LOC118147697 Neighboring gene uncharacterized LOC118147703 Neighboring gene zinc finger BED-type containing 4 Neighboring gene ALG12 alpha-1,6-mannosyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MOZ/MORF histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bromodomain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071442.1 Reference mCalJa1.2.pat.X

    Range
    215913358..215959899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035273872.2 → XP_035129763.1  bromodomain-containing protein 1 isoform X4

    Conserved Domains (5) summary
    cd05839
    Location:922 → 1037
    BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
    COG5141
    Location:139 → 606
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15702
    Location:271 → 388
    ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
    pfam10513
    Location:47 → 196
    EPL1; Enhancer of polycomb-like
    cl02556
    Location:566 → 658
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  2. XM_035273863.2 → XP_035129754.1  bromodomain-containing protein 1 isoform X2

    Conserved Domains (5) summary
    cd05839
    Location:1053 → 1168
    BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
    COG5141
    Location:139 → 606
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15702
    Location:271 → 388
    ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
    pfam10513
    Location:47 → 196
    EPL1; Enhancer of polycomb-like
    cl02556
    Location:566 → 658
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  3. XM_035273879.2 → XP_035129770.1  bromodomain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    F6ZNV1
    Conserved Domains (5) summary
    cd05839
    Location:892 → 1007
    BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
    cd05512
    Location:566 → 663
    Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
    COG5141
    Location:139 → 591
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15702
    Location:271 → 388
    ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
    pfam10513
    Location:47 → 196
    EPL1; Enhancer of polycomb-like

  4. XM_035273865.2 → XP_035129756.1  bromodomain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A5F4W856, U3D0F5
    Conserved Domains (5) summary
    cd05839
    Location:927 → 1042
    BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
    cd05512
    Location:566 → 663
    Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
    COG5141
    Location:139 → 591
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15702
    Location:271 → 388
    ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
    pfam10513
    Location:47 → 196
    EPL1; Enhancer of polycomb-like

  5. XM_035273856.2 → XP_035129747.1  bromodomain-containing protein 1 isoform X1

    Conserved Domains (5) summary
    cd05839
    Location:1058 → 1173
    BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
    cd05512
    Location:566 → 663
    Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
    COG5141
    Location:139 → 591
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15702
    Location:271 → 388
    ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
    pfam10513
    Location:47 → 196
    EPL1; Enhancer of polycomb-like

  6. XM_035273887.2 → XP_035129778.1  bromodomain-containing protein 1 isoform X1

    Conserved Domains (5) summary
    cd05839
    Location:1058 → 1173
    BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
    cd05512
    Location:566 → 663
    Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
    COG5141
    Location:139 → 591
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15702
    Location:271 → 388
    ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
    pfam10513
    Location:47 → 196
    EPL1; Enhancer of polycomb-like

  7. XM_035273906.2 → XP_035129797.1  bromodomain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A5F4WIV9
    Conserved Domains (4) summary
    cd05512
    Location:566 → 663
    Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
    COG5141
    Location:139 → 591
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15702
    Location:271 → 388
    ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
    pfam10513
    Location:47 → 196
    EPL1; Enhancer of polycomb-like

  8. XM_035273902.2 → XP_035129793.1  bromodomain-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A5F4WIV9
    Conserved Domains (4) summary
    cd05512
    Location:566 → 663
    Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
    COG5141
    Location:139 → 591
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15702
    Location:271 → 388
    ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
    pfam10513
    Location:47 → 196
    EPL1; Enhancer of polycomb-like

RNA

  1. XR_008475393.1 RNA Sequence

Nucleotide Protein
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