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SLC6A9 solute carrier family 6 member 9 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100387499, updated on 6-Jun-2024

Summary

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Gene symbol
SLC6A9
Gene description
solute carrier family 6 member 9
See related
Ensembl:ENSCJAG00000003879
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 7 NC_071448.1 (77738356..77775052, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 7 NC_048389.1 (79225992..79262665, complement)

Chromosome 7 - NC_071448.1Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V0 subunit b Neighboring gene beta-1,4-galactosyltransferase 2 Neighboring gene coiled-coil domain containing 24 Neighboring gene uncharacterized LOC103794392 Neighboring gene KLF transcription factor 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycine:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycine import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic transmission, glycinergic IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium- and chloride-dependent glycine transporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071448.1 Reference mCalJa1.2.pat.X

    Range
    77738356..77775052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035251158.2 → XP_035107049.1  sodium- and chloride-dependent glycine transporter 1 isoform X5

    UniProtKB/TrEMBL
    F6S9N5, U3EGN0
    Conserved Domains (1) summary
    cd11498
    Location:11 → 594
    SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

  2. XM_054259253.1 → XP_054115228.1  sodium- and chloride-dependent glycine transporter 1 isoform X6

    UniProtKB/TrEMBL
    F6S9N5

  3. XM_035251161.2 → XP_035107052.1  sodium- and chloride-dependent glycine transporter 1 isoform X7

    UniProtKB/TrEMBL
    F6S9N5
    Conserved Domains (1) summary
    cl00456
    Location:11 → 537
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_035251162.2 → XP_035107053.1  sodium- and chloride-dependent glycine transporter 1 isoform X8

    UniProtKB/TrEMBL
    F6S9N5
    Conserved Domains (1) summary
    cl00456
    Location:1 → 529
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  5. XM_035251159.2 → XP_035107050.1  sodium- and chloride-dependent glycine transporter 1 isoform X5

    UniProtKB/TrEMBL
    F6S9N5, U3EGN0
    Conserved Domains (1) summary
    cd11498
    Location:11 → 594
    SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

  6. XM_054259252.1 → XP_054115227.1  sodium- and chloride-dependent glycine transporter 1 isoform X5

    UniProtKB/TrEMBL
    F6S9N5, U3EGN0

  7. XM_054259254.1 → XP_054115229.1  sodium- and chloride-dependent glycine transporter 1 isoform X9

    UniProtKB/TrEMBL
    F6S9N5

  8. XM_035251157.2 → XP_035107048.1  sodium- and chloride-dependent glycine transporter 1 isoform X4

    UniProtKB/TrEMBL
    A0A8I3W5X3
    Conserved Domains (1) summary
    cl00456
    Location:83 → 609
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  9. XM_054259251.1 → XP_054115226.1  sodium- and chloride-dependent glycine transporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I4A586

  10. XM_035251155.2 → XP_035107046.1  sodium- and chloride-dependent glycine transporter 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I4A586
    Conserved Domains (1) summary
    cd11498
    Location:83 → 666
    SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

  11. XM_035251156.2 → XP_035107047.1  sodium- and chloride-dependent glycine transporter 1 isoform X2

    UniProtKB/TrEMBL
    A0A2R8NCR5, F6S9N5
    Conserved Domains (1) summary
    cd11498
    Location:42 → 625
    SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

  12. XM_035251163.2 → XP_035107054.1  sodium- and chloride-dependent glycine transporter 1 isoform X8

    UniProtKB/TrEMBL
    F6S9N5
    Conserved Domains (1) summary
    cl00456
    Location:1 → 529
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
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