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NPTN neuroplastin [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100387039, updated on 6-Jun-2024

Summary

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Gene symbol
NPTN
Gene description
neuroplastin
See related
Ensembl:ENSCJAG00000018009
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 10 NC_071451.1 (17958153..18029411, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 10 NC_048392.1 (18173902..18245315, complement)

Chromosome 10 - NC_071451.1Genomic Context describing neighboring genes Neighboring gene actin, cytoplasmic 1-like Neighboring gene REC114 meiotic recombination protein Neighboring gene uncharacterized LOC118144819 Neighboring gene CD276 molecule Neighboring gene uncharacterized LOC118144820 Neighboring gene inhibitory synaptic factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
neuroplastin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071451.1 Reference mCalJa1.2.pat.X

    Range
    17958153..18029411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054239415.1 → XP_054095390.1  neuroplastin isoform X4

    UniProtKB/TrEMBL
    A0A8I3WXT7, F6PJT9

  2. XM_009005220.3 → XP_009003468.1  neuroplastin isoform X6

    See identical proteins and their annotated locations for XP_009003468.1

    UniProtKB/TrEMBL
    A0A8I3WE45, U3CH63
    Conserved Domains (2) summary
    cl11960
    Location:52 → 103
    Ig; Immunoglobulin domain
    cl28434
    Location:134 → 217
    I-set; Immunoglobulin I-set domain

  3. XM_009005219.3 → XP_009003467.1  neuroplastin isoform X5

    See identical proteins and their annotated locations for XP_009003467.1

    UniProtKB/TrEMBL
    A0A8I3WE45, U3DF71
    Related
    ENSCJAP00000033310.2
    Conserved Domains (2) summary
    smart00410
    Location:129 → 217
    IG_like; Immunoglobulin like
    cl11960
    Location:52 → 103
    Ig; Immunoglobulin domain

  4. XM_009005218.4 → XP_009003466.1  neuroplastin isoform X3

    See identical proteins and their annotated locations for XP_009003466.1

    UniProtKB/TrEMBL
    A0A8I3WXT7, U3BYY2
    Conserved Domains (3) summary
    pfam13927
    Location:33 → 120
    Ig_3; Immunoglobulin domain
    cl11960
    Location:168 → 219
    Ig; Immunoglobulin domain
    cl28434
    Location:250 → 333
    I-set; Immunoglobulin I-set domain

  5. XM_002753317.6 → XP_002753363.1  neuroplastin isoform X2

    See identical proteins and their annotated locations for XP_002753363.1

    UniProtKB/TrEMBL
    A0A8I3WXT7, F6PJT0
    Related
    ENSCJAP00000033311.2
    Conserved Domains (3) summary
    pfam13927
    Location:33 → 120
    Ig_3; Immunoglobulin domain
    cl11960
    Location:168 → 219
    Ig; Immunoglobulin domain
    cl28434
    Location:250 → 333
    I-set; Immunoglobulin I-set domain

  6. XM_054239414.1 → XP_054095389.1  neuroplastin isoform X1

    UniProtKB/TrEMBL
    A0A8I3WXT7

RNA

  1. XR_004729606.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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