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ATXN2L ataxin 2 like [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100386696, updated on 6-Jun-2024

Summary

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Gene symbol
ATXN2L
Gene description
ataxin 2 like
See related
Ensembl:ENSCJAG00000006251
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See ATXN2L in Genome Data Viewer
Location:
chromosome: 12
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 12 NC_071453.1 (26910694..26925776, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 12 NC_048394.1 (26778402..26793497, complement)

Chromosome 12 - NC_071453.1Genomic Context describing neighboring genes Neighboring gene SH2B adaptor protein 1 Neighboring gene Tu translation elongation factor, mitochondrial Neighboring gene programmed cell death 5 pseudogene Neighboring gene eukaryotic translation initiation factor 3 subunit C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071453.1 Reference mCalJa1.2.pat.X

    Range
    26910694..26925776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054242731.1 → XP_054098706.1  ataxin-2-like protein isoform X21

    UniProtKB/TrEMBL
    U3FYA2

  2. XM_035267309.2 → XP_035123200.1  ataxin-2-like protein isoform X14

    UniProtKB/TrEMBL
    U3BZ04, U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 745
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:662 → 942
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  3. XM_035267308.2 → XP_035123199.1  ataxin-2-like protein isoform X13

    UniProtKB/TrEMBL
    U3CAT8, U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 745
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:662 → 942
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  4. XM_054242730.1 → XP_054098705.1  ataxin-2-like protein isoform X17

    UniProtKB/TrEMBL
    U3FYA2

  5. XM_054242729.1 → XP_054098704.1  ataxin-2-like protein isoform X4

    UniProtKB/TrEMBL
    U3FYA2

  6. XM_035267300.2 → XP_035123191.1  ataxin-2-like protein isoform X9

    UniProtKB/TrEMBL
    U3F3M0, U3FYA2
    Conserved Domains (4) summary
    PHA03247
    Location:669 → 1055
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:210 → 745
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  7. XM_035267299.2 → XP_035123190.1  ataxin-2-like protein isoform X8

    UniProtKB/TrEMBL
    U3EAI5, U3FYA2
    Conserved Domains (4) summary
    PHA03247
    Location:669 → 1061
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:210 → 745
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  8. XM_054242728.1 → XP_054098703.1  ataxin-2-like protein isoform X2

    UniProtKB/TrEMBL
    F7HD84, U3FYA2

  9. XM_035267296.2 → XP_035123187.1  ataxin-2-like protein isoform X5

    UniProtKB/TrEMBL
    U3DCP8, U3FYA2
    Conserved Domains (4) summary
    PHA03247
    Location:669 → 1038
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:210 → 745
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  10. XM_035267307.1 → XP_035123198.1  ataxin-2-like protein isoform X12

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:668 → 948
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  11. XM_035267306.2 → XP_035123197.1  ataxin-2-like protein isoform X11

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:668 → 948
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  12. XM_035267310.1 → XP_035123201.1  ataxin-2-like protein isoform X15

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:668 → 948
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  13. XM_035267294.1 → XP_035123185.1  ataxin-2-like protein isoform X3

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:668 → 948
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  14. XM_035267298.1 → XP_035123189.1  ataxin-2-like protein isoform X7

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    PHA03247
    Location:675 → 1061
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  15. XM_035267297.2 → XP_035123188.1  ataxin-2-like protein isoform X6

    UniProtKB/TrEMBL
    F7HIE4, U3FYA2
    Conserved Domains (4) summary
    PHA03247
    Location:675 → 1067
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  16. XM_035267301.1 → XP_035123192.1  ataxin-2-like protein isoform X10

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    PHA03247
    Location:675 → 1058
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  17. XM_035267287.1 → XP_035123178.1  ataxin-2-like protein isoform X1

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:668 → 948
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  18. XM_035267318.2 → XP_035123209.1  ataxin-2-like protein isoform X20

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:150 → 685
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:602 → 882
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:205 → 267
    LsmAD; LsmAD domain
    pfam14438
    Location:64 → 137
    SM-ATX; Ataxin 2 SM domain

  19. XM_035267317.2 → XP_035123208.1  ataxin-2-like protein isoform X19

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    PHA03247
    Location:609 → 1001
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:150 → 685
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:205 → 267
    LsmAD; LsmAD domain
    pfam14438
    Location:64 → 137
    SM-ATX; Ataxin 2 SM domain

  20. XM_035267315.1 → XP_035123206.1  ataxin-2-like protein isoform X16

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    PHA03247
    Location:615 → 984
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:150 → 691
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:205 → 267
    LsmAD; LsmAD domain
    pfam14438
    Location:64 → 137
    SM-ATX; Ataxin 2 SM domain

  21. XM_035267316.2 → XP_035123207.1  ataxin-2-like protein isoform X18

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    PHA03247
    Location:609 → 978
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:150 → 685
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:205 → 267
    LsmAD; LsmAD domain
    pfam14438
    Location:64 → 137
    SM-ATX; Ataxin 2 SM domain

  22. XM_035267313.2 → XP_035123204.1  ataxin-2-like protein isoform X15

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:668 → 948
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  23. XM_035267304.2 → XP_035123195.1  ataxin-2-like protein isoform X10

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    PHA03247
    Location:675 → 1058
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  24. XM_035267290.2 → XP_035123181.1  ataxin-2-like protein isoform X1

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:668 → 948
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  25. XM_035267311.2 → XP_035123202.1  ataxin-2-like protein isoform X15

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:668 → 948
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  26. XM_035267302.2 → XP_035123193.1  ataxin-2-like protein isoform X10

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    PHA03247
    Location:675 → 1058
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  27. XM_035267288.2 → XP_035123179.1  ataxin-2-like protein isoform X1

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:668 → 948
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  28. XM_035267312.2 → XP_035123203.1  ataxin-2-like protein isoform X15

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:668 → 948
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  29. XM_035267303.2 → XP_035123194.1  ataxin-2-like protein isoform X10

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    PHA03247
    Location:675 → 1058
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain

  30. XM_035267289.2 → XP_035123180.1  ataxin-2-like protein isoform X1

    UniProtKB/TrEMBL
    U3FYA2
    Conserved Domains (4) summary
    COG5180
    Location:210 → 751
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:668 → 948
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain
Nucleotide Protein
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