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ATP7B ATPase copper transporting beta [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100384908, updated on 3-Apr-2024

Summary

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Gene symbol
ATP7B
Gene description
ATPase copper transporting beta
See related
Ensembl:ENSCJAG00000008347
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See ATP7B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 1 NC_071442.1 (63180896..63253704, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 1 NC_048383.1 (62915782..62989266, complement)

Chromosome 1 - NC_071442.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128931550 Neighboring gene U1 small nuclear ribonucleoprotein C-like Neighboring gene glutathione peroxidase 1-like Neighboring gene ALG11 alpha-1,2-mannosyltransferase Neighboring gene UTP14C small subunit processome component Neighboring gene NIMA related kinase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled monoatomic cation transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic cation transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
copper-transporting ATPase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071442.1 Reference mCalJa1.2.pat.X

    Range
    63180896..63253704 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035297481.2 → XP_035153372.1  copper-transporting ATPase 2 isoform X6

    UniProtKB/TrEMBL
    A0A5F4W7A3
    Conserved Domains (2) summary
    cd00371
    Location:377 → 440
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    cd02094
    Location:613 → 1322
    P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B

  2. XM_035297434.2 → XP_035153325.1  copper-transporting ATPase 2 isoform X2

    UniProtKB/TrEMBL
    F7GPF0
    Conserved Domains (2) summary
    cd00371
    Location:377 → 440
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    cd02094
    Location:667 → 1367
    P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B

  3. XM_035297425.2 → XP_035153316.1  copper-transporting ATPase 2 isoform X1

    UniProtKB/TrEMBL
    F7GPF0
    Conserved Domains (2) summary
    cd00371
    Location:377 → 440
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    cd02094
    Location:667 → 1376
    P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B

  4. XM_035297456.2 → XP_035153347.1  copper-transporting ATPase 2 isoform X4

    UniProtKB/TrEMBL
    A0A5K1V470, U3E354
    Conserved Domains (2) summary
    cd00371
    Location:362 → 425
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    cd02094
    Location:652 → 1352
    P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B

  5. XM_035297445.2 → XP_035153336.1  copper-transporting ATPase 2 isoform X3

    UniProtKB/TrEMBL
    F7GZP3, U3E354
    Conserved Domains (2) summary
    cd00371
    Location:362 → 425
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    cd02094
    Location:652 → 1361
    P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B

  6. XM_054252852.1 → XP_054108827.1  copper-transporting ATPase 2 isoform X5

    UniProtKB/TrEMBL
    F7GUP4

  7. XM_054252846.1 → XP_054108821.1  copper-transporting ATPase 2 isoform X5

    UniProtKB/TrEMBL
    F7GUP4

  8. XM_054252840.1 → XP_054108815.1  copper-transporting ATPase 2 isoform X1

  9. XM_035297470.2 → XP_035153361.1  copper-transporting ATPase 2 isoform X5

    UniProtKB/TrEMBL
    F6XTH0, F7GUP4
    Conserved Domains (2) summary
    cd00371
    Location:345 → 408
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    cd02094
    Location:635 → 1344
    P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B

  10. XM_035297461.2 → XP_035153352.1  copper-transporting ATPase 2 isoform X5

    UniProtKB/TrEMBL
    F6XTH0, F7GUP4
    Conserved Domains (2) summary
    cd00371
    Location:345 → 408
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    cd02094
    Location:635 → 1344
    P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B

  11. XM_035297429.2 → XP_035153320.1  copper-transporting ATPase 2 isoform X1

    UniProtKB/TrEMBL
    F7GPF0
    Conserved Domains (2) summary
    cd00371
    Location:377 → 440
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    cd02094
    Location:667 → 1376
    P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B

  12. XM_035297430.2 → XP_035153321.1  copper-transporting ATPase 2 isoform X1

    UniProtKB/TrEMBL
    F7GPF0
    Conserved Domains (2) summary
    cd00371
    Location:377 → 440
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    cd02094
    Location:667 → 1376
    P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B

  13. XM_035297431.2 → XP_035153322.1  copper-transporting ATPase 2 isoform X1

    UniProtKB/TrEMBL
    F7GPF0
    Conserved Domains (2) summary
    cd00371
    Location:377 → 440
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    cd02094
    Location:667 → 1376
    P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B

RNA

  1. XR_008480020.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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