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LOC100383479 uncharacterized LOC100383479 [ Zea mays ]

Gene ID: 100383479, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100383479
Gene description
uncharacterized LOC100383479
Locus tag
ZEAMMB73_Zm00001d002929
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
ARF5; GRMZM5G808366
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (26935241..26939986, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (26786836..26791581, complement)

Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103646175 Neighboring gene uncharacterized LOC100272249 Neighboring gene DUF740 family protein Neighboring gene probable glucuronosyltransferase Os01g0926700 Neighboring gene uncharacterized LOC103646180

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
  2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Auxin response factor 13
Names
ARF5 transcription factor
Auxin response factor 17
auxin response factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001176127.1 → NP_001169598.1  Auxin response factor 13

    See identical proteins and their annotated locations for NP_001169598.1

    Status: PROVISIONAL

    Source sequence(s)
    BT067327
    UniProtKB/TrEMBL
    A0A3L6FPW5, C0PGA8, K0DCT2
    Conserved Domains (2) summary
    pfam02362
    Location:117 → 217
    B3; B3 DNA binding domain
    pfam06507
    Location:256 → 315
    Auxin_resp; Auxin response factor

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    26935241..26939986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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