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LOC100383306 ubiquitin carboxyl-terminal hydrolase 12 [ Zea mays ]

Gene ID: 100383306, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100383306
Gene description
ubiquitin carboxyl-terminal hydrolase 12
Locus tag
ZEAMMB73_Zm00001d023640
Gene type
protein coding
RefSeq status
MODEL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G303655; GRMZM2G426486
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Genomic context

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Location:
chromosome: 10
Exon count:
31
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 10 NC_050105.1 (13109157..13133149, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 10 NC_024468.2 (13317622..13341584, complement)

Chromosome 10 - NC_050105.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100272717 Neighboring gene Alba DNA/RNA-binding protein Neighboring gene uncharacterized LOC118473509 Neighboring gene Pumilio homolog 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
  2. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
  3. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein stability IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 12; uncharacterized protein LOC100383306
Names
Ubiquitin carboxyl-terminal hydrolase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050105.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    13109157..13133149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020545177.2 → XP_020400766.1  ubiquitin carboxyl-terminal hydrolase 12

    UniProtKB/TrEMBL
    A0A1D6IUI9, A0A1D6IUL4
    Conserved Domains (1) summary
    cl02553
    Location:60 → 1119
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001175964.1: Suppressed sequence

    Description
    NM_001175964.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
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