APOC2 apolipoprotein C2 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: APOC2provided by VGNC
Official Full Name: apolipoprotein C2provided by VGNC
Primary source: VGNC:VGNC:110413
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Biased expression in liver (RPKM 2166.8) and mixtures (RPKM 810.6) See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	6	NC_010448.4 (51404219..51406302)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	6	NC_010448.3 (47285954..47288054)

Chromosome 6 - NC_010448.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables lipid binding	IEA Inferred from Electronic Annotation more info	PubMed
enables lipoprotein lipase activator activity	IEA Inferred from Electronic Annotation more info	PubMed
enables phospholipase activator activity	IEA Inferred from Electronic Annotation more info	PubMed
enables phospholipase binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in chylomicron remnant clearance	IEA Inferred from Electronic Annotation more info	PubMed
involved_in high-density lipoprotein particle clearance	IEA Inferred from Electronic Annotation more info	PubMed
involved_in lipid metabolic process	IEA Inferred from Electronic Annotation more info	PubMed
involved_in lipid transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in negative regulation of very-low-density lipoprotein particle clearance	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of lipoprotein lipase activity	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of phospholipase activity	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of phospholipid catabolic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of chylomicron	IEA Inferred from Electronic Annotation more info	PubMed
part_of intermediate-density lipoprotein particle	IEA Inferred from Electronic Annotation more info	PubMed
part_of low-density lipoprotein particle	IEA Inferred from Electronic Annotation more info	PubMed
part_of spherical high-density lipoprotein particle	IEA Inferred from Electronic Annotation more info	PubMed
part_of very-low-density lipoprotein particle	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: apolipoprotein C-II

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.