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nub1 negative regulator of ubiquitin-like proteins 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100380517, updated on 30-Nov-2023

Summary

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Gene symbol
nub1
Gene description
negative regulator of ubiquitin-like proteins 1
See related
Ensembl:ENSSSAG00000055379
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See nub1 in Genome Data Viewer
Location:
chromosome: ssa19
Exon count:
16
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa19 NC_059460.1 (75494525..75500091)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa19 NC_027318.1 (72068696..72074130)

Chromosome ssa19 - NC_059460.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106579674 Neighboring gene uncharacterized protein C9orf152 Neighboring gene gamma-crystallin N-B Neighboring gene GTP-binding protein Rheb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NEDD8 ultimate buster 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001173802.1 → NP_001167273.1  NEDD8 ultimate buster 1

    See identical proteins and their annotated locations for NP_001167273.1

    Status: PROVISIONAL

    Source sequence(s)
    BT059536
    UniProtKB/TrEMBL
    C0HB30
    Related
    ENSSSAP00000174715.1, ENSSSAT00000173302.1
    Conserved Domains (3) summary
    cd14291
    Location:369 → 404
    UBA1_NUB1_like; UBA1 domain found in NEDD8 ultimate buster 1 (NUB1) and similar proteins
    cd14293
    Location:483 → 518
    UBA3_NUB1; UBA3 domain found in NEDD8 ultimate buster 1 (NUB1) and similar proteins
    cl21463
    Location:427 → 461
    UBA_like_SF; UBA domain-like superfamily

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059460.1 Reference Ssal_v3.1

    Range
    75494525..75500091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014159694.2 → XP_014015169.1  NEDD8 ultimate buster 1 isoform X2

    UniProtKB/TrEMBL
    A0A1S3NIA0
    Related
    ENSSSAP00000059277.2, ENSSSAT00000089037.2
    Conserved Domains (3) summary
    cd14291
    Location:369 → 404
    UBA1_NUB1_like; UBA1 domain found in NEDD8 ultimate buster 1 (NUB1) and similar proteins
    cd14293
    Location:483 → 518
    UBA3_NUB1; UBA3 domain found in NEDD8 ultimate buster 1 (NUB1) and similar proteins
    cl21463
    Location:427 → 461
    UBA_like_SF; UBA domain-like superfamily

  2. XM_014159693.2 → XP_014015168.1  NEDD8 ultimate buster 1 isoform X1

    UniProtKB/TrEMBL
    C0HB30
    Conserved Domains (3) summary
    cd14291
    Location:369 → 404
    UBA1_NUB1_like; UBA1 domain found in NEDD8 ultimate buster 1 (NUB1) and similar proteins
    cd14293
    Location:483 → 518
    UBA3_NUB1; UBA3 domain found in NEDD8 ultimate buster 1 (NUB1) and similar proteins
    cl21463
    Location:427 → 461
    UBA_like_SF; UBA domain-like superfamily
Nucleotide Protein
Heading Accession and Version

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