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gtpb1 GTP-binding protein 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100380438, updated on 6-Jun-2024

Summary

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Gene symbol
gtpb1
Gene description
GTP-binding protein 1
See related
Ensembl:ENSSSAG00000000474
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa03
Exon count:
14
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa03 NC_059444.1 (76695441..76704754, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa03 NC_027302.1 (79847479..79851979, complement)

Chromosome ssa03 - NC_059444.1Genomic Context describing neighboring genes Neighboring gene polyadenylate-binding protein 1-like Neighboring gene small G protein signaling modulator 3 Neighboring gene beta-galactoside-binding lectin Neighboring gene voltage-dependent T-type calcium channel subunit alpha-1I-like Neighboring gene beta-galactoside-binding lectin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GTP-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001173722.1 → NP_001167193.1  GTP-binding protein 1

    See identical proteins and their annotated locations for NP_001167193.1

    Status: PROVISIONAL

    Source sequence(s)
    BT059334
    UniProtKB/TrEMBL
    A0A1S3RBK0, C0HAH8
    Related
    ENSSSAP00000000883.2, ENSSSAT00000000963.2
    Conserved Domains (2) summary
    cd04165
    Location:164 → 386
    GTPBP1_like; GTP binding protein 1 (GTPBP1)-like family includes GTPBP2
    COG5258
    Location:78 → 576
    GTPBP1; GTPase [General function prediction only]

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059444.1 Reference Ssal_v3.1

    Range
    76695441..76704754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045714310.1 → XP_045570266.1  GTP-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A1S3RBK0

  2. XM_045714309.1 → XP_045570265.1  GTP-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1S3RBK0

RNA

  1. XR_006769025.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials