U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PCIF1 PDX1 C-terminal inhibiting factor 1 [ Saccoglossus kowalevskii ]

Gene ID: 100378944, updated on 19-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
PCIF1
Gene description
PDX1 C-terminal inhibiting factor 1
See related
EnsemblRapid:GeneID_100378944
Gene type
protein coding
RefSeq status
MODEL
Organism
Saccoglossus kowalevskii
Lineage
Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Skow_1.1 (GCF_000003605.2) Unplaced Scaffold NW_003107103.1 (111939..130556)

NW_003107103.1Genomic Context describing neighboring genes Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 18-like Neighboring gene ubiquitin carboxyl-terminal hydrolase CYLD-like Neighboring gene repressor of RNA polymerase III transcription MAF1 homolog

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003107103 unplaced scaffold reference Skow_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II C-terminal domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
phosphorylated CTD-interacting factor 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Saccoglossus kowalevskii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Skow_1.1 Primary Assembly

Genomic

  1. NW_003107103.1 Reference Skow_1.1 Primary Assembly

    Range
    111939..130556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002730933.2 → XP_002730979.1  phosphorylated CTD-interacting factor 1

    Related
    XP_002730979.1, XM_002730933.2
    Conserved Domains (2) summary
    cd00201
    Location:87 → 114
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam12237
    Location:460 → 621
    PCIF1_WW; Phosphorylated CTD interacting factor 1 WW domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.