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CLSTN1 calsyntenin 1 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100356725, updated on 8-Mar-2024

Summary

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Gene symbol
CLSTN1
Gene description
calsyntenin 1
See related
Ensembl:ENSOCUG00000011064 Ensembl:ENSOCUG00000030596
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See CLSTN1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 13 NC_067386.1 (140501179..140564910)

Chromosome 13 - NC_067386.1Genomic Context describing neighboring genes Neighboring gene catenin beta interacting protein 1 Neighboring gene uncharacterized LOC108177746 Neighboring gene uncharacterized LOC103350334 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta Neighboring gene transmembrane protein 201

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067386.1 Chromosome 13 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables X11-like protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calsyntenin-1
Names
beta-catenin-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067386.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    140501179..140564910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051858098.1 → XP_051714058.1  calsyntenin-1 isoform X1

  2. XM_051858100.1 → XP_051714060.1  calsyntenin-1 isoform X3

  3. XM_051858099.1 → XP_051714059.1  calsyntenin-1 isoform X2

  4. XM_051858101.1 → XP_051714061.1  calsyntenin-1 isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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