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GIN1 gypsy retrotransposon integrase 1 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100352766, updated on 8-Mar-2024

Summary

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Gene symbol
GIN1
Gene description
gypsy retrotransposon integrase 1
See related
Ensembl:ENSOCUG00000025993
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See GIN1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 11 NC_067384.1 (67038724..67061025)

Chromosome 11 - NC_067384.1Genomic Context describing neighboring genes Neighboring gene U6 snRNA-associated Sm-like protein LSm3 Neighboring gene macrophage immunometabolism regulator Neighboring gene diphosphoinositol pentakisphosphate kinase 2 Neighboring gene peptidylglycine alpha-amidating monooxygenase Neighboring gene uncharacterized LOC103349560 Neighboring gene uncharacterized LOC103349559 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067384.1 Chromosome 11 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gypsy retrotransposon integrase-like protein 1
Names
zinc finger, H2C2 domain containing

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067384.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    67038724..67061025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008261986.3 → XP_008260208.3  gypsy retrotransposon integrase-like protein 1 isoform X2

  2. XM_008261985.3 → XP_008260207.1  gypsy retrotransposon integrase-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F9CCB8, G1TL16
    Related
    ENSOCUP00000017660.2
    Conserved Domains (1) summary
    cl21549
    Location:235 → 329
    rve; Integrase core domain

  3. XM_002713944.4 → XP_002713990.1  gypsy retrotransposon integrase-like protein 1 isoform X2

    See identical proteins and their annotated locations for XP_002713990.1

    Conserved Domains (1) summary
    cl21549
    Location:154 → 248
    rve; Integrase core domain

  4. XM_051853955.1 → XP_051709915.1  gypsy retrotransposon integrase-like protein 1 isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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