U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

MATR3 matrin 3 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100347887, updated on 3-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
MATR3
Gene description
matrin 3
See related
Ensembl:ENSOCUG00000026311
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 3 NC_067376.1 (21487062..21519518)

Chromosome 3 - NC_067376.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127490682 Neighboring gene U1 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA74 Neighboring gene poly(A) binding protein interacting protein 2 Neighboring gene solute carrier family 23 member 1 Neighboring gene marginal zone B and B1 cell specific protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_067376.1 Chromosome 3 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
matrin-3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001205257.1 → NP_001192186.1  matrin-3

    See identical proteins and their annotated locations for NP_001192186.1

    Status: VALIDATED

    Source sequence(s)
    DN885725, DN890610, DN890611, EB377333, EC620741, VIYN02002992
    UniProtKB/TrEMBL
    A0A5F9DFM1, G1TX94
    Related
    ENSOCUP00000021695.2, ENSOCUT00000024817.3
    Conserved Domains (3) summary
    smart00451
    Location:798 → 833
    ZnF_U1; U1-like zinc finger
    cd12714
    Location:398 → 473
    RRM1_MATR3; RNA recognition motif 1 in vertebrate matrin-3
    cd12715
    Location:496 → 575
    RRM2_MATR3; RNA recognition motif 2 in vertebrate matrin-3

RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067376.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    21487062..21519518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008254901.2 → XP_008253123.1  matrin-3 isoform X1

    See identical proteins and their annotated locations for XP_008253123.1

    UniProtKB/TrEMBL
    A0A5F9DFM1, G1TX94
    Conserved Domains (3) summary
    smart00451
    Location:798 → 833
    ZnF_U1; U1-like zinc finger
    cd12714
    Location:398 → 473
    RRM1_MATR3; RNA recognition motif 1 in vertebrate matrin-3
    cd12715
    Location:496 → 575
    RRM2_MATR3; RNA recognition motif 2 in vertebrate matrin-3

  2. XM_008254904.3 → XP_008253126.1  matrin-3 isoform X1

    See identical proteins and their annotated locations for XP_008253126.1

    UniProtKB/TrEMBL
    A0A5F9DFM1, G1TX94
    Conserved Domains (3) summary
    smart00451
    Location:798 → 833
    ZnF_U1; U1-like zinc finger
    cd12714
    Location:398 → 473
    RRM1_MATR3; RNA recognition motif 1 in vertebrate matrin-3
    cd12715
    Location:496 → 575
    RRM2_MATR3; RNA recognition motif 2 in vertebrate matrin-3

  3. XM_017340989.2 → XP_017196478.1  matrin-3 isoform X3

  4. XM_051843325.1 → XP_051699285.1  matrin-3 isoform X1

    UniProtKB/TrEMBL
    G1TX94

  5. XM_008254905.3 → XP_008253127.1  matrin-3 isoform X1

    See identical proteins and their annotated locations for XP_008253127.1

    UniProtKB/TrEMBL
    A0A5F9DFM1, G1TX94
    Conserved Domains (3) summary
    smart00451
    Location:798 → 833
    ZnF_U1; U1-like zinc finger
    cd12714
    Location:398 → 473
    RRM1_MATR3; RNA recognition motif 1 in vertebrate matrin-3
    cd12715
    Location:496 → 575
    RRM2_MATR3; RNA recognition motif 2 in vertebrate matrin-3

  6. XM_008254906.3 → XP_008253128.1  matrin-3 isoform X2

    UniProtKB/TrEMBL
    A0A5F9D3B0
    Related
    ENSOCUP00000040199.1
    Conserved Domains (3) summary
    smart00451
    Location:510 → 545
    ZnF_U1; U1-like zinc finger
    cd12714
    Location:110 → 185
    RRM1_MATR3; RNA recognition motif 1 in vertebrate matrin-3
    cd12715
    Location:208 → 287
    RRM2_MATR3; RNA recognition motif 2 in vertebrate matrin-3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.