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CDH9 cadherin 9 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100346544, updated on 8-Mar-2024

Summary

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Gene symbol
CDH9
Gene description
cadherin 9
See related
Ensembl:ENSOCUG00000004461
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See CDH9 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 11 NC_067384.1 (39862338..40008472)

Chromosome 11 - NC_067384.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103349595 Neighboring gene histone H4-like Neighboring gene isochorismatase domain-containing protein 1-like Neighboring gene 60S ribosomal protein L9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067384.1 Chromosome 11 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-9
Names
cadherin 9, type 2 (T1-cadherin)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067384.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    39862338..40008472
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002714092.4 → XP_002714138.1  cadherin-9

    UniProtKB/TrEMBL
    A0A5F9CFQ2, G1SLV1
    Related
    ENSOCUP00000003853.2
    Conserved Domains (2) summary
    cd11304
    Location:164 → 264
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:645 → 782
    Cadherin_C; Cadherin cytoplasmic region
Nucleotide Protein
Heading Accession and Version

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