U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rag1.L recombination activating gene 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100337559, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
rag1.L
Official Full Name
recombination activating gene 1 L homeolog
Primary source
Xenbase:XB-GENE-6464357
Locus tag
XELAEV_18021830mg
See related
EnsemblRapid:ENSXLAG00005022233
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rag-1; rag1b
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4L
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (7578593..7588538, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (7655195..7659768, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene exostosin glycosyltransferase 2 L homeolog Neighboring gene intraflagellar transport associated protein L homeolog Neighboring gene TNF receptor associated factor 6 L homeolog Neighboring gene proline rich 5 like L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Ancestry influences the fate of duplicated genes millions of years after polyploidization of clawed frogs (Xenopus). Evans BJ. Genetics, 2007 Jun. PMID 17435227, Free PMC Article
  2. Evolution of RAG-1 in polyploid clawed frogs. Evans BJ, et al. Mol Biol Evol, 2005 May. PMID 15703243

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables histone binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within B cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within DNA recombination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within T cell differentiation in thymus IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within V(D)J recombination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
V(D)J recombination-activating protein 1 L homeolog
Names
V(D)J recombination-activating protein 1 b
recombination activating gene 1 b
recombination activating protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001349446.1 → NP_001336375.1  V(D)J recombination-activating protein 1 L homeolog

    Status: VALIDATED

    Source sequence(s)
    JAGEVR010000047
    UniProtKB/TrEMBL
    A0A1L8GIM4, A0A974HLG3, A0A974HN43
    Conserved Domains (4) summary
    pfam10426
    Location:355 → 384
    zf-RAG1; Recombination-activating protein 1 zinc-finger domain
    pfam12940
    Location:389 → 1044
    RAG1; Recombination-activation protein 1 (RAG1), recombinase
    cd16530
    Location:290 → 335
    RING-HC_RAG1; RING finger, HC subclass, found in recombination activating gene-1 (RAG-1) and similar proteins
    pfam12560
    Location:11 → 291
    RAG1_imp_bd; RAG1 importin binding

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    7578593..7588538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041589106.1 → XP_041445040.1  V(D)J recombination-activating protein 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GIM4, A0A974HLG3, A0A974HN43
    Related
    ENSXLAP00005065359.1, ENSXLAT00005066875.1
    Conserved Domains (4) summary
    pfam10426
    Location:355 → 384
    zf-RAG1; Recombination-activating protein 1 zinc-finger domain
    pfam12940
    Location:389 → 1044
    RAG1; Recombination-activation protein 1 (RAG1), recombinase
    cd16530
    Location:290 → 335
    RING-HC_RAG1; RING finger, HC subclass, found in recombination activating gene-1 (RAG-1) and similar proteins
    pfam12560
    Location:11 → 291
    RAG1_imp_bd; RAG1 importin binding
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.