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SPTLC3 serine palmitoyltransferase long chain base subunit 3 [ Bos taurus (domestic cattle) ]

Gene ID: 100336940, updated on 17-Aug-2024

Summary

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Official Symbol
SPTLC3provided by VGNC
Official Full Name
serine palmitoyltransferase long chain base subunit 3provided by VGNC
Primary source
VGNC:VGNC:35258
See related
BGD:BT12572
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (6599456..6747913)

Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA70 Neighboring gene large ribosomal subunit protein eL33-like Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene uncharacterized LOC112449246 Neighboring gene cytochrome c oxidase subunit 7A2, mitochondrial-like Neighboring gene isthmin 1 Neighboring gene taspase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 3
Names
serine palmitoyltransferase, long chain base subunit 2
XP_002692086.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    6599456..6747913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002692040.6 → XP_002692086.1  serine palmitoyltransferase 3

    See identical proteins and their annotated locations for XP_002692086.1

    Conserved Domains (2) summary
    PLN02483
    Location:54 → 546
    PLN02483; serine palmitoyltransferase
    COG0156
    Location:106 → 521
    BioF; 7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]
Nucleotide Protein Strain
Heading Accession and Version

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Research Materials