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ahr.L aryl hydrocarbon receptor L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100335047, updated on 2-May-2024

Summary

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Official Symbol
ahr.L
Official Full Name
aryl hydrocarbon receptor L homeolog
Primary source
Xenbase:XB-GENE-17336745
Locus tag
XELAEV_18030961mg
See related
EnsemblRapid:ENSXLAG00005031076
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ahr; ahr1a; bHLHe76
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Genomic context

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See ahr.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (38227646..38318704)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (37887958..37979483, complement)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene anterior gradient 2, protein disulphide isomerase family member L homeolog Neighboring gene anterior gradient 3, protein disulphide isomerase family member L homeolog Neighboring gene sorting nexin 13 L homeolog Neighboring gene histone deacetylase 9 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Aryl hydrocarbon receptors in the frog Xenopus laevis: two AhR1 paralogs exhibit low affinity for 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD). Lavine JA, et al. Toxicol Sci, 2005 Nov. PMID 15958654, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to xenobiotic stimulus IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within rhythmic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within xenobiotic metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
aryl hydrocarbon receptor L homeolog
Names
aryl hydrocarbon receptor 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001171912.2 → NP_001165383.1  aryl hydrocarbon receptor L homeolog

    See identical proteins and their annotated locations for NP_001165383.1

    Status: PROVISIONAL

    Source sequence(s)
    AY635782
    UniProtKB/TrEMBL
    A0A974CLV5, Q4QY31
    Related
    ENSXLAP00005093410.1, ENSXLAT00005095093.1
    Conserved Domains (3) summary
    pfam00989
    Location:105 → 213
    PAS; PAS fold
    pfam08447
    Location:284 → 368
    PAS_3; PAS fold
    cd11436
    Location:25 → 85
    bHLH-PAS_AhR; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor (AhR) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    38227646..38318704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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