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si:ch73-106l15.2 si:ch73-106l15.2 [ Danio rerio (zebrafish) ]

Gene ID: 100333005, updated on 27-Mar-2024

Summary

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Official Symbol
si:ch73-106l15.2provided by ZNC
Official Full Name
si:ch73-106l15.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-131119-94
See related
Ensembl:ENSDARG00000111097 AllianceGenome:ZFIN:ZDB-GENE-131119-94
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including positive regulation of I-kappaB kinase/NF-kappaB signaling; positive regulation of NF-kappaB transcription factor activity; and protein ubiquitination. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (5365637..5393897, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (5456103..5483973, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene von Willebrand factor A domain-containing protein 7-like Neighboring gene si:ch73-106l15.3 Neighboring gene vitelline membrane outer layer 1 homolog a Neighboring gene tripartite motif containing 35-7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc-binding protein A33-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    5365637..5393897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472562.1 → XP_021328237.1  zinc-binding protein A33-like

    UniProtKB/TrEMBL
    A0A8M9PAX5
    Related
    ENSDARP00000033888.7, ENSDART00000031885.8
    Conserved Domains (4) summary
    cd00021
    Location:90 → 126
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cl02614
    Location:292 → 448
    SPRY; SPRY domain
    cl17238
    Location:9 → 53
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl25407
    Location:134 → 238
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
Nucleotide Protein Strain
Heading Accession and Version

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