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cltb clathrin, light chain B [ Danio rerio (zebrafish) ]

Gene ID: 100329879, updated on 27-Mar-2024

Summary

Official Symbol
cltbprovided by ZNC
Official Full Name
clathrin, light chain Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-101005-2
See related
Ensembl:ENSDARG00000052368 AllianceGenome:ZFIN:ZDB-GENE-101005-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb07a05
Summary
Predicted to enable structural molecule activity. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin coat of coated pit and clathrin coat of trans-Golgi network vesicle. Orthologous to human CLTB (clathrin light chain B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See cltb in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (51023514..51039121, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (45872282..45887897, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene Fas associated factor family member 2 Neighboring gene HIG1 hypoxia inducible domain family, member 2A Neighboring gene PDZ and LIM domain 7 Neighboring gene unc-5 netrin receptor A

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of clathrin coat of coated pit IEA
Inferred from Electronic Annotation
more info
 
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
 
located_in clathrin-coated pit IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    51023514..51039121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005168222.4XP_005168279.1  clathrin light chain B isoform X1

    UniProtKB/TrEMBL
    A0A286Y9F1, A0A8M2BG62
    Related
    ENSDARP00000143798.1, ENSDART00000178932.2
    Conserved Domains (1) summary
    pfam01086
    Location:1223
    Clathrin_lg_ch; Clathrin light chain
  2. XM_005168223.4XP_005168280.1  clathrin light chain B isoform X2

    UniProtKB/TrEMBL
    A0A8M2BFK7
    Conserved Domains (1) summary
    pfam01086
    Location:1205
    Clathrin_lg_ch; Clathrin light chain