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cn37 2,3-cyclic-nucleotide 3-phosphodiesterase [ Salmo salar (Atlantic salmon) ]

Gene ID: 100306871, updated on 30-Nov-2023

Summary

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Gene symbol
cn37
Gene description
2,3-cyclic-nucleotide 3-phosphodiesterase
See related
Ensembl:ENSSSAG00000041127
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa06
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa06 NC_059447.1 (41365759..41371450)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa06 NC_027305.1 (38120784..38126472)

Chromosome ssa06 - NC_059447.1Genomic Context describing neighboring genes Neighboring gene heat shock 70 kDa protein-like Neighboring gene outer dynein arm-docking complex subunit 4-like Neighboring gene ATP-citrate synthase Neighboring gene kelch-like protein 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cyclic nucleotide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2,3-cyclic-nucleotide 3-phosphodiesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001165410.1 → NP_001158882.1  2,3-cyclic-nucleotide 3-phosphodiesterase

    See identical proteins and their annotated locations for NP_001158882.1

    Status: PROVISIONAL

    Source sequence(s)
    BT058960
    UniProtKB/TrEMBL
    C0H9F4
    Related
    ENSSSAP00000033116.2, ENSSSAT00000058639.2
    Conserved Domains (3) summary
    pfam05881
    Location:446 → 659
    CNPase; 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase)
    pfam13207
    Location:310 → 332
    AAA_17; AAA domain
    pfam13671
    Location:310 → 442
    AAA_33; AAA domain

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059447.1 Reference Ssal_v3.1

    Range
    41365759..41371450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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