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sf3a2 splicing factor 3a, subunit 2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100306862, updated on 8-Mar-2024

Summary

Gene symbol
sf3a2
Gene description
splicing factor 3a, subunit 2
See related
Ensembl:ENSSSAG00000080497
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
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Genomic context

Location:
chromosome: ssa14
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa14 NC_059455.1 (38876155..38889376, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa14 NC_027313.1 (38759089..38772318, complement)

Chromosome ssa14 - NC_059455.1Genomic Context describing neighboring genes Neighboring gene CD63 antigen-like Neighboring gene uncharacterized LOC106569539 Neighboring gene pleckstrin homology domain containing, family J member 1 Neighboring gene fizzy-related protein homolog

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
splicing factor 3A subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001165401.1NP_001158873.1  splicing factor 3A subunit 2

    See identical proteins and their annotated locations for NP_001158873.1

    Status: PROVISIONAL

    Source sequence(s)
    BT058942
    UniProtKB/TrEMBL
    C0H9D6
    Related
    ENSSSAP00000117472.1, ENSSSAT00000152694.2
    Conserved Domains (1) summary
    COG5246
    Location:1216
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059455.1 Reference Ssal_v3.1

    Range
    38876155..38889376 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)