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atg7 ATG7 autophagy related 7 homolog (S. cerevisiae) [ Salmo salar (Atlantic salmon) ]

Gene ID: 100306781, updated on 8-Mar-2024

Summary

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Gene symbol
atg7
Gene description
ATG7 autophagy related 7 homolog (S. cerevisiae)
See related
Ensembl:ENSSSAG00000059670
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: ssa22
Exon count:
20
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa22 NC_059463.1 (58667625..58789416, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa22 NC_027321.1 (59541377..59622396) , (58688187..58689700, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) Unplaced Scaffold NW_012357771.1 (107..5450)

Chromosome ssa22 - NC_059463.1Genomic Context describing neighboring genes Neighboring gene TAM41 mitochondrial translocator assembly and maintenance homolog Neighboring gene vestigial-like family member 4b Neighboring gene histamine receptor H1 Neighboring gene hyphally-regulated protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg12 activating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Atg8 activating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in C-terminal protein lipidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein modification by small protein conjugation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like modifier-activating enzyme ATG7
Names
Autophagy-related protein 7
autophagy related 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001165320.1 → NP_001158792.1  ubiquitin-like modifier-activating enzyme ATG7

    See identical proteins and their annotated locations for NP_001158792.1

    Status: PROVISIONAL

    Source sequence(s)
    BT058768
    UniProtKB/TrEMBL
    C0H8W2
    Related
    ENSSSAP00000130990.1, ENSSSAT00000235470.1
    Conserved Domains (1) summary
    TIGR01381
    Location:17 → 715
    E1_like_apg7; E1-like protein-activating enzyme Gsa7p/Apg7p

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059463.1 Reference Ssal_v3.1

    Range
    58667625..58789416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045705015.1 → XP_045560971.1  ubiquitin-like modifier-activating enzyme ATG7 isoform X1

    UniProtKB/TrEMBL
    C0H8W2
    Related
    ENSSSAP00000182568.1, ENSSSAT00000194131.1
    Conserved Domains (1) summary
    TIGR01381
    Location:17 → 715
    E1_like_apg7; E1-like protein-activating enzyme Gsa7p/Apg7p
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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