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chmp5b charged multivesicular body protein 5b [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100305259, updated on 14-Dec-2023

Summary

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Gene symbol
chmp5b
Gene description
charged multivesicular body protein 5b
See related
Ensembl:ENSOMYG00000021092
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
chmp5
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Genomic context

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See chmp5b in Genome Data Viewer
Location:
chromosome: 15
Exon count:
8
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 15 NC_048579.1 (28222578..28227687)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 15 NC_035091.1 (24733261..24738634)

Chromosome 15 - NC_048579.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing protein 16-like Neighboring gene tripartite motif-containing protein 16-like Neighboring gene FAST kinase domains 3 Neighboring gene myosin, light chain 12, genome duplicate 1 Neighboring gene myomesin 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in late endosome to vacuole transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle budding from membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
charged multivesicular body protein 5
Names
chromatin modifying protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001165164.1 → NP_001158636.1  charged multivesicular body protein 5

    See identical proteins and their annotated locations for NP_001158636.1

    Status: PROVISIONAL

    Source sequence(s)
    BT074160
    UniProtKB/TrEMBL
    C1BGC2, C1BHT1
    Related
    ENSOMYP00000046218.2, ENSOMYT00000050286.2
    Conserved Domains (1) summary
    cl21588
    Location:1 → 203
    Snf7; Snf7

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048579.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    28222578..28227687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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