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catl Cathepsin L [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100305208, updated on 14-Dec-2023

Summary

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Gene symbol
catl
Gene description
Cathepsin L
See related
Ensembl:ENSOMYG00000030465
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See catl in Genome Data Viewer
Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 17 NC_048581.1 (33798978..33811605, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 17 NC_035093.1 (19166095..19186163, complement)

Chromosome 17 - NC_048581.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118940097 Neighboring gene transmembrane protein 121-like Neighboring gene piggyBac transposable element-derived protein 4-like Neighboring gene cathepsin L1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Cathepsin L

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001165112.1 → NP_001158584.1  Cathepsin L precursor

    See identical proteins and their annotated locations for NP_001158584.1

    Status: PROVISIONAL

    Source sequence(s)
    BT073939
    UniProtKB/TrEMBL
    A0A8C7SG61, C1BH60
    Related
    ENSOMYP00000065741.2, ENSOMYT00000071607.2
    Conserved Domains (3) summary
    PTZ00203
    Location:9 → 326
    PTZ00203; cathepsin L protease; Provisional
    smart00848
    Location:29 → 87
    Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
    cd02248
    Location:119 → 328
    Peptidase_C1A; Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, ...

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048581.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    33798978..33811605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases